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SCNpilot_expt_1000_bf_scaffold_4272_12

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(9824..10033)

Top 3 Functional Annotations

Value Algorithm Source
cold-shock protein n=1 Tax=Rhizobium giardinii RepID=UPI00037097CC similarity UNIREF
DB: UNIREF100
  • Identity: 76.8
  • Coverage: 69.0
  • Bit_score: 114
  • Evalue 3.20e-23
Cold shock protein {ECO:0000313|EMBL:EYR81773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.7
  • Coverage: 69.0
  • Bit_score: 133
  • Evalue 9.40e-29
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 78.3
  • Coverage: 69.0
  • Bit_score: 113
  • Evalue 3.00e-23

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGGCAACTGGCACCGTAAAGTGGTTCAACACGACCAAGGGCTACGGCTTCATTCAGCAGGACAGCGGTGAACCGGACGTTTTCGTCCACATCTCCGCCGTACAGCGCGCTGGCCTCGCAGGTCTCGACGAAGGTCAGAAGGTCAGCTTCGAGCTGATCCGTGACCGCAAGTCCGGCAAGATGTCGGCCGACCAGCTCTCCGCAGCATAA
PROTEIN sequence
Length: 70
MATGTVKWFNTTKGYGFIQQDSGEPDVFVHISAVQRAGLAGLDEGQKVSFELIRDRKSGKMSADQLSAA*