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SCNpilot_expt_1000_bf_scaffold_4001_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(2..889)

Top 3 Functional Annotations

Value Algorithm Source
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.1
  • Coverage: 301.0
  • Bit_score: 483
  • Evalue 1.90e-133
  • rbh
Diguanylate cyclase {ECO:0000313|EMBL:EYR80176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.1
  • Coverage: 301.0
  • Bit_score: 483
  • Evalue 2.70e-133
GGDEF family protein similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 301.0
  • Bit_score: 260
  • Evalue 4.80e-67

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 888
ATGACCCACAGAAAATCCTCGAAAACCGACATCGCCTTGAGAATCGCGATGGCGATGAAGCAGATGGGCATTGACGGCCTGCCGCGCAATTACGAACTGGTCTACGAGGCCTATGCCGGCAGCAATCCGGATCTCGTGCGCGACTTCATCGCGCTCGGTAAATACAAGTCGCAGGCCGCCCTCGACGAACTCGGCCGCAAATACCTGCCCCACCAGCACGAGGCGAGCGTGCTGCAGCGTTCGGCGGGCGCGCTCAGCAGCGAGATGAGCAATTTCATGCACCTGCTCAGCCAGGAGCGCTCCTCGCTCAACGACTATGGCCGCCTGATCGGCGAGGCCTCGCAGGTCATCCGCGATGCCGGAGGACTTGGTGAAGGCGCGCTCGGCAGCTCGCTCGAGGCGCTGCAGCGGGCGACCGAGCAGCGCGTCAACCATGCGGCGGAAATGGCGGAGAAGGTCGCGGCGCAGACCGCCGCCATGGAAAGCATCCAGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAACCGCCGCGCCTTCAACAAGGCGCTCGCCCGCGTCTACGCCAATCCGCAGATGCCGCTGCTCTGTGGCGTGGCGATCGCGGAGGTCGATGCCGAGCGGCGGTTCTCGCCCGGCCAGATCGAGGCGCTGTCGGACCATCTCGTCACCTTCTATGGCGGCCTCATCCGCCAGGCCTTCCCGGTGCAGGACCTTGCCGTGCGCTTCGACGGCCTGCGTTTCGGTTTCCTGTTCAACACCGCGGACGAGGGCGAGGTAACGCGCCTTGTCGATCTCCTGCGCGCGGCCTTCCAGGCGGTGCCGCTGCGTGATCCGCGCACCGGCCGCAATCTCGGCAATCTCACGCTTTCCACCGGC
PROTEIN sequence
Length: 296
MTHRKSSKTDIALRIAMAMKQMGIDGLPRNYELVYEAYAGSNPDLVRDFIALGKYKSQAALDELGRKYLPHQHEASVLQRSAGALSSEMSNFMHLLSQERSSLNDYGRLIGEASQVIRDAGGLGEGALGSSLEALQRATEQRVNHAAEMAEKVAAQTAAMESIQKEXXXXXXXXXXXGNRRAFNKALARVYANPQMPLLCGVAIAEVDAERRFSPGQIEALSDHLVTFYGGLIRQAFPVQDLAVRFDGLRFGFLFNTADEGEVTRLVDLLRAAFQAVPLRDPRTGRNLGNLTLSTG