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SCNpilot_expt_1000_bf_scaffold_3372_19

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(16720..17793)

Top 3 Functional Annotations

Value Algorithm Source
Putative component of multidrug efflux system n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQE8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 357.0
  • Bit_score: 589
  • Evalue 3.00e-165
  • rbh
Putative component of multidrug efflux system {ECO:0000313|EMBL:EYR80862.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 357.0
  • Bit_score: 589
  • Evalue 4.20e-165
RND family mulitdrug efflux protein similarity KEGG
DB: KEGG
  • Identity: 47.9
  • Coverage: 357.0
  • Bit_score: 324
  • Evalue 3.30e-86

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1074
ATGAGGATGTCCGTTCCCATGGCGCTTGCCGTCGCCGCCGCCATGGCGCTTGCCGGCTGCAAGAAGGAAGAGGAGGCGGCCGCGCCGCCGCGGCCGGTGCTCTCGCTGGTGGTCAAGCCCACGGCGCTGCCGGGCACGCGGTTCGCCGGCACGGTGCAGGCGAGGGTGCAGGCCGCGCTCGGCTCGCGCGTCGCCGGCCGCCTCGTCTCCCGTACCGTCCATGTCGGCGACCTCGTCAAGAAGGGCGACGCGCTCGCCGTGCTCGACGCGACGGCCTACGAACTGGCCGTCCGCTCCGCGCGCGCCGAGCTCTCCAGCGCCGAGGCGACGCTTGCAAGCGCCATCGCCAACCAGGATCGGCAGAAAACCCTGCTCCAGTCCAATGCCGCGGCCAAGGCGGCCGTCGAGAGCGCCGAACAGACCCGCGAGGCGGCGGATGCCGGCGTGACGCGGGCGCGCACGGCGCTGGTGAAGGCCGAAGAGCAGCTCTCCTATACCCGCATCCTCGCCGAATTCGACGGCGTCGTGGTCGCGACGGGCGCCGAGGTGGGCCAGACGGTCTCGCCCGGCGAGGCCATCGTCACCGTTGCCCGGCCGGACGAGCGCGATGCGGTCGTCGACATTCCCGAGACGGCGGAGGGCATCTCCGCCGGCAGCCGGTTCCTCGTCTCGCTGCAGATCAATCCCGCCGTCACCGTCAAGGGAACGGTGCGCGAGGTCGCGCCCTCGGCGGATGCCGTGACGCGCACGCGCCGCGTCAAGATCGCGCTGGAAGACCCGCCGGACACCGTCCGGCTCGGCACGACGATCACCGCCGAGCTCGAGGGACCCGACCTCACGGCCTTCATGGTGCCGGAAACGGCGCTGGTCCGGAAGGACGACAAGCCGCATGTCTGGCTGGTCGATGCGGGCAAGGGCGAGGTGCATCTCGTGCCCGTCGAGACGGGCGCGACGGCCGGGCGGTTGCTGGCCGTGACCGAAGGCCTGAAGGAGGGCGACCGCGTCGTCACCGCCGGCGTGAACAGCCTTGAAGAAGGCCAGAAAGTGAAGATCGAGGACGAGGCAAGCCTATGA
PROTEIN sequence
Length: 358
MRMSVPMALAVAAAMALAGCKKEEEAAAPPRPVLSLVVKPTALPGTRFAGTVQARVQAALGSRVAGRLVSRTVHVGDLVKKGDALAVLDATAYELAVRSARAELSSAEATLASAIANQDRQKTLLQSNAAAKAAVESAEQTREAADAGVTRARTALVKAEEQLSYTRILAEFDGVVVATGAEVGQTVSPGEAIVTVARPDERDAVVDIPETAEGISAGSRFLVSLQINPAVTVKGTVREVAPSADAVTRTRRVKIALEDPPDTVRLGTTITAELEGPDLTAFMVPETALVRKDDKPHVWLVDAGKGEVHLVPVETGATAGRLLAVTEGLKEGDRVVTAGVNSLEEGQKVKIEDEASL*