ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4923_14

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 10544..10921

Top 3 Functional Annotations

Value Algorithm Source
PRC-barrel protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJT5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.2
  • Coverage: 114.0
  • Bit_score: 229
  • Evalue 2.10e-57
PRC-barrel protein {ECO:0000313|EMBL:EYR83527.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.2
  • Coverage: 114.0
  • Bit_score: 229
  • Evalue 3.00e-57
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 67.5
  • Coverage: 114.0
  • Bit_score: 170
  • Evalue 2.80e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 378
ATGCAAACATTCGCGAAANNNNNNNNNNNNNNNNNCCAGGATCTGATCGCCAGCGACAAGGTCGAGGGCACGAACGTCTACGGCGCCGACGGCGAGCGCATCGGCTCGGTCGAACGCCTGATCCTCGACAAGCGGAGCGGCCACGTTTCCTATGCCGTCCTCAGCTTCGGCGGTTTCCTCGGCATCGGCCAGGACCATTATCCGCTGCCCTGGGCCAAGCTGAGCTATGACGAAGGCCTCGGCGGCTATCGCGTCGACGTGACGAAGGAACAGGTCGAAAACGCCCCGCACTACGAAAGCGACGCCGAATACGATTGGGACCGCCGCAACGGCAAGGCGATCCACGACTACTACGGTGTTCCCCCCTACTGGATGTAA
PROTEIN sequence
Length: 126
MQTFAKXXXXXXQDLIASDKVEGTNVYGADGERIGSVERLILDKRSGHVSYAVLSFGGFLGIGQDHYPLPWAKLSYDEGLGGYRVDVTKEQVENAPHYESDAEYDWDRRNGKAIHDYYGVPPYWM*