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SCNpilot_expt_1000_bf_scaffold_5707_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(952..1818)

Top 3 Functional Annotations

Value Algorithm Source
Outer membrane protein assembly factor BamD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVJ4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 288.0
  • Bit_score: 518
  • Evalue 4.00e-144
  • rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 288.0
  • Bit_score: 518
  • Evalue 5.60e-144
comL; competence lipoprotein ComL; K05807 putative lipoprotein similarity KEGG
DB: KEGG
  • Identity: 73.3
  • Coverage: 288.0
  • Bit_score: 428
  • Evalue 2.20e-117
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 867
ATGGTTGTTGCAGGGTCTGTTGGTGTGAAGAAGACGGCGCGCATTGTCTATCTTTCGCTTTTCGCTATGGCGTCTTCGGTCGTTCTTTCCGCTTGCCAGTCGGATCCGGACATCGACATCACGAAGCTCACGGGTGAAACCGAATCCGCCGACACGCTCTATAACCAGGGCCTGGCCAACCTCAATGCCGGCAAGGTGAGCGAGGCGGGCCGCAAGTTCGAGGCGGTCGACCGGCAGAACCCGTTCTCCGACCAGGCGCGCAAGTCGCTCGTCATGCTCGCCTTCACGAATTACCGCCAGGGCCGCAACGAAGAGGCGATCTCCGCCGGCAAGCGCTATCTCTCGCTCTATCCGGGATCGGAAGACGCCGCCTATGCGCAGTACATCGTCGGCCTTGCCTACTGGAAGCAGATCCCGAGCGTGACGCAGAACCAGCGCGCCTCGCAGCAGACCATCGAGGCGATGCAGTCCGTCATCGACAACTATCCGAACTCGGAATATGTCGAGGACGCACAGGCGAAGATCCGCTTTGCCCGCGACCAGCTCGCCGGCAAGGAAATGCAGGTGGGCCGCTACTACCTGGAGCGCAAGGAATATATCGCGGCGGCGACCCGCTTCCGCGTGGTCGTCGAGAAATATCCGATGACGAACCAGATCGAGGAGGCGCTGGCGCGTCTCGTCGAGACCTATTACGCCATGGGCGTCGACAGCGAGGCGCAGACGGCGGCCGCCGTCCTCGGCCACAACTACCCGGACAGCCAGTGGTACTCCGACAGCTACAAGCTTCTGCAGACCAAGGGTCTGGAGCCGCGTGAAAATTCCGGTTCCTGGATCGCCCGCGCCGGCAAGAAGCTGATCGGCGCCTGA
PROTEIN sequence
Length: 289
MVVAGSVGVKKTARIVYLSLFAMASSVVLSACQSDPDIDITKLTGETESADTLYNQGLANLNAGKVSEAGRKFEAVDRQNPFSDQARKSLVMLAFTNYRQGRNEEAISAGKRYLSLYPGSEDAAYAQYIVGLAYWKQIPSVTQNQRASQQTIEAMQSVIDNYPNSEYVEDAQAKIRFARDQLAGKEMQVGRYYLERKEYIAAATRFRVVVEKYPMTNQIEEALARLVETYYAMGVDSEAQTAAAVLGHNYPDSQWYSDSYKLLQTKGLEPRENSGSWIARAGKKLIGA*