ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5177_16

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 15410..16231

Top 3 Functional Annotations

Value Algorithm Source
Octopine transport system permease protein OccM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4B1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.1
  • Coverage: 272.0
  • Bit_score: 491
  • Evalue 5.00e-136
  • rbh
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83368.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 272.0
  • Bit_score: 491
  • Evalue 7.00e-136
putative transport system permease ABC transporter protein; K02029 polar amino acid transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 81.4
  • Coverage: 274.0
  • Bit_score: 450
  • Evalue 3.10e-124
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 822
ATGATGAGCGACCAGACCGTTTCCGCCCTCGCGCTGACCGAACTCCCGACGAAGCGGAGCTTCTTCAAGCCGCACCGCATCGTGCTGATGGCCATTGCCGCCGCACTCGTCTTCTCTGCCGTGTGGTTCATGCGCTGGGACTGGTTGCCGCGATATTCTGGGCGCCTCGCGCATGGCGTCGGCGTCACCCTGCTGCTGCTGGCCGGCACCTCGATCCTCGGTTTCCTCCTCGCCGTGCCGATCGGCCTCGTGCAGGTGACGGGGCCGTGGCCGCTGAAGATGCTGGCGCGCGGCTTCTGCACGGTCGTGCGCGGCACGCCGCTGCTCCTGCAGCTCTGGCTGCTCTACTATGGCCTCGGCTCGCTCTTCCCGCAGTTTCCGGAGATCCGCAACTCGTTCCTCTGGCCCTATCTGCGCGAAGCCTGGCCCTACGGCATGGCGGCGCTGACCATATCCTTCGCCGCCTACGAGGGCGAAGTCATGCGCGGCGCCTTTGCCGGCGTGCCGCCGGGCGAGCTGGAGGCCGCCCGTGCCTATGGCATGGGCCGCTTCACCATGTTCCGCCGCATCTGGCTGCCGCGCGCCGTGCACCGCGCGCTGCCGACGCTGAACGGCGAGACGGTGCTCCAGTTGAAGTCGACGCCGCTCGTCGCGACGATCACGGTGATCGACGTCTACGCCGTCATCTCCAAGGTGCGGCAGGAGACCTATATCACCTACGAGCCGCTGCTGCTGCTGGCGCTCATCTATCTCTGCCTCACCGCCATCCTGGTGGTCGCCTTCCGCTATTTCGAGAGCAGGATCCCGACGCGCGGCGCCTGA
PROTEIN sequence
Length: 274
MMSDQTVSALALTELPTKRSFFKPHRIVLMAIAAALVFSAVWFMRWDWLPRYSGRLAHGVGVTLLLLAGTSILGFLLAVPIGLVQVTGPWPLKMLARGFCTVVRGTPLLLQLWLLYYGLGSLFPQFPEIRNSFLWPYLREAWPYGMAALTISFAAYEGEVMRGAFAGVPPGELEAARAYGMGRFTMFRRIWLPRAVHRALPTLNGETVLQLKSTPLVATITVIDVYAVISKVRQETYITYEPLLLLALIYLCLTAILVVAFRYFESRIPTRGA*