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SCNpilot_expt_1000_bf_scaffold_5372_3

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(3677..5353)

Top 3 Functional Annotations

Value Algorithm Source
Transport transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSM5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 554.0
  • Bit_score: 961
  • Evalue 2.60e-277
  • rbh
Transport transmembrane protein {ECO:0000313|EMBL:EYR79112.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 554.0
  • Bit_score: 961
  • Evalue 3.70e-277
transport transmembrane protein similarity KEGG
DB: KEGG
  • Identity: 70.0
  • Coverage: 557.0
  • Bit_score: 745
  • Evalue 9.40e-213
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1677
ATGACCGATGCATTGATGCCGAAGCTCGCCAGCATTTTCGCGGAGGGCTACAGCCTCGCGCGGTTGCGGGCCGATGCGCTGTCCGGCCTGACGGTGGCGATCGTCGCGCTGCCGCTTTCCATGGCCATCGCCATCGCCTCCGGCGTAACGCCGGACCGCGGCCTCTATACCGCCATCGTCGGCGGCTTCCTCGTCTCCGCGCTCGGCGGCAGCCGCTTCCAGGTGGGCGGGCCGGCCGGCGCCTTCATCGTGCTCGTCTCGGTGACCGCCGCCCGACACGGCATCGAGGGCCTGCTGCTCGCCACCTTCCTCTCCGGCATCATGCTGGCGATCGCCGGCTATCTCCGGCTCGGCAAGTACATCAAGTTCATTCCCTCCCCGGTCACGGTAGGCTTCACCGCCGGCATCGCCATCATCATCTTCGCCAGCCAGATCGGCGAACTCTTCGGCCTGAAGCTCGACGGGCGCGAACCGGGTCCGATCCTGGAAAAGCTCTCGGCGCTCTGGGCCGCGCGCCCCACCTTCAGCCCCGCCGCCTTCGGCGTCGCCGCGCTCACCATCGCGATCATCCTGCTTTTGCGACGCTTCCGCCCCTCCTGGCCCAACCTCCTCATCGCGGTCGCGGTGTCGTCGCTCGTGACCGCTCTCCTCGCGCTGCCGGCGGACACCATCGGCACCCGCTTCGGCGGGATTCCGCGCAGCCTGCCGGTGCCGGCCCTGCCGTCCTTCTCCCCGCAGCTCGTGCTTGCGGTTCTGCCGGATGCGGTCGCCTTCGCCCTGCTCGGCGCCATCGAATCGCTGCTGTCGGCGGTCGTCGCGGACGGCATGACGGGGCGGCGGCATCGCTCCAGCATGGAGCTCGTCGCCCAGGGTTTCGCCAATGTCGGCTCGGCGCTCTTCGGCGGCATCTGCGTGACCGGCACCATCGCGCGCACGGCGACGAATGTCCGCTCCGGCGCCACCAGCCCGGTCTCCGGCATGCTGCGCGCCGTGTTCATTCTCGTCTTCATGCTCGTCGCCGCCCCGCTCGCCAGCTACATCCCGCTCGCCGCCCTTGCCGGCGTGCTGGCCGTGGTCTCGTTCAACATGATCGAGCGCCCGGCGATCGCCGCCCTCTTCCGCTCCTCGCGGGGCGATGCGGCGGTGCTCGCCGTCACCTTCCTGCTCGTGGTCTTCCGGGACCTGACCGAAGGCATCGTCGTCGGCTTCCTGCTCGGCGCCGTGCTCTTCATCGACCGCATGGGCAAGGCGGTGAACATTCGCGAGGAGACGGTGCCCCGCCTCGTGCGCGCCATCGAGGATGCCGGCGAGGACAACGACCTGCCGGAACGGCCCGTCGTGGCGGACGATCCCGATACGGTGATCTACCGCATCAGCGGCGTTTTCTTCTTCGGCGCGGCGGCCAGCGTCGGCTCGGTGCTCGACCGGATCGCGGACCAGCGGCGCAATTTCGTGCTCGACTGCACGGATGTGCCGCTGCTCGATTCCACCGCCGCCAGCGTCATAGAGGGCCTCGTGCGCAAGGCCGAGCGCGCCGGCGTGCGCGTCTTCATCGCTGGGCTGAAACCGGACATGCGGCGATTGCTGGAAGCCCACGAACTGCATGCGCCGCGCGTCACCTTCACCCCGACGGCCGATGCCGCCATGGCGGAGATTGCGGCGCGGCGCGCGTCATAG
PROTEIN sequence
Length: 559
MTDALMPKLASIFAEGYSLARLRADALSGLTVAIVALPLSMAIAIASGVTPDRGLYTAIVGGFLVSALGGSRFQVGGPAGAFIVLVSVTAARHGIEGLLLATFLSGIMLAIAGYLRLGKYIKFIPSPVTVGFTAGIAIIIFASQIGELFGLKLDGREPGPILEKLSALWAARPTFSPAAFGVAALTIAIILLLRRFRPSWPNLLIAVAVSSLVTALLALPADTIGTRFGGIPRSLPVPALPSFSPQLVLAVLPDAVAFALLGAIESLLSAVVADGMTGRRHRSSMELVAQGFANVGSALFGGICVTGTIARTATNVRSGATSPVSGMLRAVFILVFMLVAAPLASYIPLAALAGVLAVVSFNMIERPAIAALFRSSRGDAAVLAVTFLLVVFRDLTEGIVVGFLLGAVLFIDRMGKAVNIREETVPRLVRAIEDAGEDNDLPERPVVADDPDTVIYRISGVFFFGAAASVGSVLDRIADQRRNFVLDCTDVPLLDSTAASVIEGLVRKAERAGVRVFIAGLKPDMRRLLEAHELHAPRVTFTPTADAAMAEIAARRAS*