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SCNpilot_expt_1000_bf_scaffold_7470_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(941..1873)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 311.0
  • Bit_score: 564
  • Evalue 7.40e-158
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] similarity KEGG
DB: KEGG
  • Identity: 84.2
  • Coverage: 310.0
  • Bit_score: 522
  • Evalue 7.20e-146
tRNA pseudouridine synthase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4F5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.0
  • Coverage: 311.0
  • Bit_score: 564
  • Evalue 5.20e-158
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
ATGTCCAGACCCCGCAAACCCAAGGGCCGGCCGGTTTCCGGCTGGCTGATCCTAGACAAGCCGTTCGACTTCGGCTCGACCGAGGCCGTCTCCAAGATCAAGTGGCTGTTCAAGGCGCAGAAGGCCGGCCATGCCGGCACGCTCGATCCGCTCGCCTCCGGCATGCTGCCGATCGCGCTGGGCGATGCCACCAAGACCGTGCCTTATGTCATGGACGGCCGGAAGATCTACGAATTCACGGTGGCCTGGGGCGAGGAGCGCACGACGGACGACCTCGAAGGCGAGGTGACGCAAAGCTCCGACAGGCGGCCGACCGCCGGCGAGATCACCGCGATCCTCGGCGGCTATACGGGCGTCATCCGCCAGGTTCCCCCGCAGTTCTCCGCGATCAAGATCGACGGCGAGCGCGCCTATGACCTCGCCCGCGAGGGCGAGACCGTCGAAATCCCCTCGCGCGAGGTGGAGATCCACCGCCTGACGCTGATCGGCTCGGACGAGAACACGGCCGCCTTCGAGGTGGAATGCGGCAAGGGCACCTATGTGCGCGCGCTCGCCCGCGATTTCGGCCGCCAGCTCGGCTGCTACGGCCATATCTCGGCGCTGCGCCGCACCTTCGTCGCGCCCTTCGGCGAGGACGACATGGTGCCGCTCGCCGACCTCACGGCGCTGGAGAAGATCGAGGACGATGCCGAGCGGCTCGCCGCCCTCGATGCCTTCCTGATCGATACGGGCGAGGCGCTTTCCAGCCTGCCGCAGGTGGTCGTCAACGACGACCAGGCCCACCGGCTGCGCATGGGCAACCCGATCATCCTGCGCGGCCGCGACGCGCCCGTTTCGGCGGACGAGGCCTATGCCACGGCGCGCGGAAAGCTGGTCGCCATCGGCGAGATCGGCGGCGGCGAGTTCCGCCCGAAGCGGGGTTTTGCAGGCTAG
PROTEIN sequence
Length: 311
MSRPRKPKGRPVSGWLILDKPFDFGSTEAVSKIKWLFKAQKAGHAGTLDPLASGMLPIALGDATKTVPYVMDGRKIYEFTVAWGEERTTDDLEGEVTQSSDRRPTAGEITAILGGYTGVIRQVPPQFSAIKIDGERAYDLAREGETVEIPSREVEIHRLTLIGSDENTAAFEVECGKGTYVRALARDFGRQLGCYGHISALRRTFVAPFGEDDMVPLADLTALEKIEDDAERLAALDAFLIDTGEALSSLPQVVVNDDQAHRLRMGNPIILRGRDAPVSADEAYATARGKLVAIGEIGGGEFRPKRGFAG*