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SCNpilot_expt_1000_bf_scaffold_7470_22

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(18620..18934)

Top 3 Functional Annotations

Value Algorithm Source
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.5
  • Coverage: 104.0
  • Bit_score: 185
  • Evalue 4.10e-44
kdsB1; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] similarity KEGG
DB: KEGG
  • Identity: 85.3
  • Coverage: 102.0
  • Bit_score: 176
  • Evalue 5.60e-42
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.5
  • Coverage: 104.0
  • Bit_score: 185
  • Evalue 2.90e-44

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 315
GTGGTCAAGGTCGTCGGCTCGCCCATCGGCGAGAGCCGCCTGCGCGCGCTCTATTTCACGCGCGCGACCGCGCCCTACGGCAACGGCCCGCTCTACCACCACATCGGCCTTTATGCCTACCGCCGCAAGGCGCTGGAGACCTTCGTGACGCTGCCGCCATCGACGCTGGAAAGGCGGGAATCGCTGGAGCAGCTTCGGGCGCTGGAGGCGGGCATGCGCATCGATGCGGAGATCGTTGACACCGTTCCGCTCGGTGTCGATACTCCCGCCGACCTCGAAAAGGCCCGCGCGATGCTCGCCGCCCATCCCATCTGA
PROTEIN sequence
Length: 105
VVKVVGSPIGESRLRALYFTRATAPYGNGPLYHHIGLYAYRRKALETFVTLPPSTLERRESLEQLRALEAGMRIDAEIVDTVPLGVDTPADLEKARAMLAAHPI*