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SCNpilot_expt_1000_bf_scaffold_7470_28

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 27242..28534

Top 3 Functional Annotations

Value Algorithm Source
Penicillin-binding protein 1C {ECO:0000313|EMBL:EYR84170.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR84170.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.3
  • Coverage: 431.0
  • Bit_score: 768
  • Evalue 6.10e-219
pbpC; penicillin-binding protein 1C (EC:2.4.2.-) similarity KEGG
DB: KEGG
  • Identity: 75.2
  • Coverage: 431.0
  • Bit_score: 636
  • Evalue 4.70e-180
Penicillin-binding protein 1C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X126_RHIFR similarity UNIREF
DB: UNIREF100
  • Identity: 75.2
  • Coverage: 431.0
  • Bit_score: 636
  • Evalue 1.50e-179

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1293
ATGGCGCTCTGGCGCAAGCTCCTCGTCGGTTCCTTCAGCGGGGCGGCGGCTATTGCCGCCCTCGCCTTCGGGCTCGACCGTGCGGACCGCGCCTATCCGCCGCCCATGGGGGTGGCGGACACCGTCTCGAAGGAAGTGCTCGACCGCGATGGCCGACTGCTGCGCGCCTTCGCGACGCCGCAGGGGCACTGGCGGCTGAAGACCACGGCCGCCGATGTCGATCCGCAATTCGTCCGCATGCTCGTCGCCTACGAGGACCGGCGCTTCAACGCGCATTCCGGCATCGATCCGCTGGCGCTTCTACGCGCCGCCGGCCAGTTCGTCACCAGCGGCCATATCGTTTCGGGCGGCTCGACGCTCTCCATGCAGGTCGCCCGCCTGATCGAGCCGCGCGAGAGCCGGTCGATGCTCGCCAAGCTGCGCCAGATGGCGCGCGCCGTCCAGCTCGAACGACGGCTCTCCAAGGCCGAGATCCTCGACCTCTACCTGACGCTCGCCCCCTATGGCGGCAATCTCGAAGGCGTGCGGGCGGCAAGCCTCGCCTGGTTCGGCAAGGAGCCGAAGCGGCTTTCCGTCGCCGAAGCCGCCCTCCTCGTCGCCCTGCCGCAGCTTCCCGAAAAGCGCCGGCCCGACCGGCACCGGGAGGTGGCGGAAAAGGCGCGCGAGCGCGTGCTGAACCGCATGGCCGTCTCCGATATCATCGGCGAAGGCGAGGCCGAGCGCGCGAGCGCCGAGGCCATCCTCACCCGCCGCCGGCAGCTTCCGTCCTACGCCGCCCATCTTTCGGAGCTCGCGCTGCGCAAGGACCCGAAGGCGGTCACGCGCAGCACCACGCTCGACCGCACCGTGCAGGACGGGCTGGAGACCGTCGCCCGCGAGGCGGCCGAGCGGCTTGGGCCGAAGGTCTCCATCGCCATGGTGATGGCCGATGCCCGCACCGGCGAGATCCTCGGCGAGGTCGGCTGGGCGGACTATTTCGATGGCAGCCGTGCCGGCTGGATCGACATGACGCGCATCCGCCGCTCGCCCGGCTCGGCGCTGAAACCCTTCATCTACGGTCTCTCCTTCGAGGAAGGCCTCGTCGCGCAGGAAACCATCGTCGAGGATCGGCCTGCCGACTTCTCCGGCTATCGTCCGCGCAATTTCGACATGACCTACCAGGGGGACGTCAGCGTGCGCAAGGCACTGCAGCTGTCGCTGAACGTGCCCGCCGTGCGCCTGCTGGAGGCGGTCGGCCCGACGCGGCTGATGGTGCGCTTCCGCCGCGCGGAGGTGCATCCCGAGCTGCCGCCG
PROTEIN sequence
Length: 431
MALWRKLLVGSFSGAAAIAALAFGLDRADRAYPPPMGVADTVSKEVLDRDGRLLRAFATPQGHWRLKTTAADVDPQFVRMLVAYEDRRFNAHSGIDPLALLRAAGQFVTSGHIVSGGSTLSMQVARLIEPRESRSMLAKLRQMARAVQLERRLSKAEILDLYLTLAPYGGNLEGVRAASLAWFGKEPKRLSVAEAALLVALPQLPEKRRPDRHREVAEKARERVLNRMAVSDIIGEGEAERASAEAILTRRRQLPSYAAHLSELALRKDPKAVTRSTTLDRTVQDGLETVAREAAERLGPKVSIAMVMADARTGEILGEVGWADYFDGSRAGWIDMTRIRRSPGSALKPFIYGLSFEEGLVAQETIVEDRPADFSGYRPRNFDMTYQGDVSVRKALQLSLNVPAVRLLEAVGPTRLMVRFRRAEVHPELPP