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SCNpilot_expt_1000_bf_scaffold_7479_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(3..794)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003782137 similarity UNIREF
DB: UNIREF100
  • Identity: 67.0
  • Coverage: 264.0
  • Bit_score: 349
  • Evalue 3.80e-93
Putative xylose operon repressor, ROK familiy protein {ECO:0000313|EMBL:EYR80948.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 264.0
  • Bit_score: 451
  • Evalue 7.70e-124
ROK family protein similarity KEGG
DB: KEGG
  • Identity: 62.9
  • Coverage: 264.0
  • Bit_score: 329
  • Evalue 7.60e-88

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 792
ATGCTGGTGAAGTCGAGCACGGAGCTAGTGCGTCAGCAGAACAGCGCGCTCGTGCTCGCCTCCCTGCGCCGGCATGGACCGCTCGCCCATACCGATATTTCCCAGCATACCGGCCTTGCCTCGGCGACCGTCTCGGCCATCACCGCGGAGCTTGAAAAGGCCGATGTGCTGGAGCGGCGCGAGCAGCAGGCGACCGCGATGCGCGGGCGGCCGCGCGTCATCTTTGGCCAGCGGCGCGCGGCGGGCTATCTCATCGCGGTGCGCATTTCCTCCGACATCGTGCAATATTCGCTGGCGGACTATGGCGGCACGCTGATCGACCGGTTCGAGGAAGCGCGTAATCACGCGGACAGCTCGACGCAGCCCTTTGCGGAAGCCTTCGTGGCGGCGCTGGAGAAGCTTGCGAGCCGGTCGCGGATCGCGCGGGAAGACGTGCTCGTCGTTTCGATCAGCAGCAAGGGGCTCGTCGATCCGGTGCTTGCGCGGCTCGTCTGGTCGCCCATCTTCGGCTCGCAGCAGGTGGATTTCGCGGCGCTGCTCCAGCCGCCTTGGCGGGCGAAGATCCTGCTCAGCAACGAGACGCTGCTCGTCGCCCATGCCATGGCGCTGCGCATGGAGCGGGCCGGCATGGAAAACCTGCACTCCGTCGCCGCGCTGTCGCTCGGCCACAGCATCGGGCTCGGCATCGCGCGGTTCGACCGCTCCGGCGAATTGTCGGTGACGGCGCCGAATTTCGGGCACATGCTGAATTCGTCGGACGGCAAGCTCTGCCGCTGCGGCTCGCAGGGATGT
PROTEIN sequence
Length: 264
MLVKSSTELVRQQNSALVLASLRRHGPLAHTDISQHTGLASATVSAITAELEKADVLERREQQATAMRGRPRVIFGQRRAAGYLIAVRISSDIVQYSLADYGGTLIDRFEEARNHADSSTQPFAEAFVAALEKLASRSRIAREDVLVVSISSKGLVDPVLARLVWSPIFGSQQVDFAALLQPPWRAKILLSNETLLVAHAMALRMERAGMENLHSVAALSLGHSIGLGIARFDRSGELSVTAPNFGHMLNSSDGKLCRCGSQGC