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SCNpilot_expt_1000_bf_scaffold_11339_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 2..598

Top 3 Functional Annotations

Value Algorithm Source
RlpA-like lipoprotein RlpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV49_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 204.0
  • Bit_score: 318
  • Evalue 5.50e-84
RlpA-like lipoprotein RlpA {ECO:0000313|EMBL:EYR79890.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.4
  • Coverage: 204.0
  • Bit_score: 318
  • Evalue 7.70e-84
lipoprotein; K03642 rare lipoprotein A similarity KEGG
DB: KEGG
  • Identity: 60.2
  • Coverage: 201.0
  • Bit_score: 219
  • Evalue 8.30e-55

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
TATGCCCGCGTCACCAATCTGGAGAATGGCACGTCCGTCGTCGTGCGCGTCAACGACCGTGGCCCGTTCCACGAGAACCGCGTGATCGACGTTTCCTCCAAGACGGCCGATCTGCTCGACATGAAGCGCACCGGCACCGCCAAGGTGCGCGTGCAATATGTCGGCAAGGCGCCCCTTGAGGGCAACGACATGCCCTATCTAATGGCGTCCTACGTGCCGAAGGGATCGCGCATTCCGGCGGTCGATCCGGGCGGCCAGATCGCCACCGGTGTCATGGTGGCTTCCGCCGATCCGCGCGCGCTGCCGGGCGCGGGCGAGGGCACGCTCTCCCTGCCGCAGACGAGCACGATGACGGCGCTCGCCAGGACCGCGCCCGAAAGCGGCGCCTTCCAGGTCATGGACCAGTTCGTCCTCCTGCCGGAAATCGGCCCGATGCCGACGGAGCGGCCGAATTTCGGCGCCGAGCCCTCCGGCGTCAGCTATGCCGCCGCATATGCGGACGAGCGCGTGCGGGATGCCTCGGGCGCCTTCGATGCCATCCTGAACCTCGGCGGCCGGTTGACCCCGCTTTCCGAACTGGCCGGCAACGCCGGCTGA
PROTEIN sequence
Length: 199
YARVTNLENGTSVVVRVNDRGPFHENRVIDVSSKTADLLDMKRTGTAKVRVQYVGKAPLEGNDMPYLMASYVPKGSRIPAVDPGGQIATGVMVASADPRALPGAGEGTLSLPQTSTMTALARTAPESGAFQVMDQFVLLPEIGPMPTERPNFGAEPSGVSYAAAYADERVRDASGAFDAILNLGGRLTPLSELAGNAG*