ggKbase home page

SCNpilot_expt_1000_bf_scaffold_16890_3

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(1208..2749)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CE851D related cluster n=1 Tax=unknown RepID=UPI0003CE851D similarity UNIREF
DB: UNIREF100
  • Identity: 59.5
  • Coverage: 519.0
  • Bit_score: 602
  • Evalue 2.90e-169
Phytoene dehydrogenase {ECO:0000313|EMBL:EYR81714.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.4
  • Coverage: 518.0
  • Bit_score: 873
  • Evalue 2.10e-250
phytoene dehydrogenase-like oxidoreductase similarity KEGG
DB: KEGG
  • Identity: 57.8
  • Coverage: 519.0
  • Bit_score: 592
  • Evalue 9.30e-167

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1542
ATGACGTCGTTTGATGCCATCGTCATCGGCGCCGGCCATAACGGCCTCGCCGCCGCCACCTGCCTCGCCAGAAGCGGCCGCAAGGTCCTGGTGCTGGAAGCGGCGGACGCGCCGGGCGGCGCGGCGCGCGGCCGGGAATTCGCGCCGGGCTTCCGCTCCGCCGGCCTTGCCCATCTCGTCAACCGGCTCGATGGCGCGGTCGCCCGCGACATCGGCCTCGACCTTGCGGGCGGTGACGCATTGTTGCCGACCACGGTGCTCGACGGCAGCGGCCGGGGCGTCACCCTCAACGGCGCCTATGGCGAAACCATCGAGGGCGTCACCGCCGAGGAGGAAGCCGCCTTCGCCGCGCTGCGCGGCAAGCTCGTCTTCCAGGCGGCTATCCTCAAGCGCTTCCTGCGCCGCCCGCCGCCGCAGATCGGCGCCATCTCGCTCGGCGACCTCTCGACCTTCGCCGCGACCGGCTTCAGCCTGATCCGCAAGGGGCGCGGCGAGGCCCGCGATTTCCTGCGCATGCTGCTGATGAACGTCGCCGACGTCGCCGACGAATATCTCGCCGACGACAGGCTGAAGGGCCTTCTCGCCTTCGACGCCACGCTCGGCATCCATCTCGGCCCCCGCTCGCCGACCTCCCTGCTCGGCCTCTACTATCGCCTGACGGGCGACGTCGCCGGCAGGACCGGCGGCCAGTTCGTGCCGGCCGGCGGCATGGCCTCGCTCGCGCCCGCCTTCGTGCGCGCCGCCGAAAAGGCCGGCGTCACCATTCGCTGCAGCGTGCCCGTCGGCCGCATCCTCGTCGACCGCGGCCGGACGAGCGGCGGCACCGAGATCGCCGCCCCCCTCGTCGTCTCCGCCATCCACCCGCAGACGACCTTCCTCCACCTCGTCGACCCCGCCGAAAGCGGCACCGGCTTCGTGCGCTCGGTGAGGAACGTGCGCAGCTTCGGCAACGTCGCCAAGCTGGACCTCGCTCTGGACCGTATCCCCAGCTTCGAAGGCCTTCCGGCCGAGGCCCGCAGCGGCCGCATCGTGCTGGTGCGCGGGATGGAACAGGTCGAGACGGCCTTCAACCCGGCGAAATACGGCGAATTCTCCCCCGACCCGGTGATGGAGATCACGCTGCCAAGCCTGGCCGATCCCGCGCTCGCGCCGGCCGGCGGCTGCACGCTGTCCGCCCTCGTGCAATATGCGCCCTACCGGCTCAAGGCGGGCTGGGAAACAGGCAAGCCTGCCTTCCTCAGGATCGTGCTGGAGACGCTGGAACGCCACGCGCCGGGCATCGGCACGTCCGTCGTCGCGGCGAGCCTGATGACGCCGGTCGACATCGAGGCGGAATACAACCTGCCCGGCGGCCACTGGCATCACGGCGAGCTGCAGGCCGACCAGTTGCTCGTCAACCGCCCGACCGGCGTGGCCTCCGGCTACACCACGCCCATCGAGGGCCTCTATCTCGCCAGCGCCGGCGCGCATCCGGGCGGCGGCATTTCCGGCCTTCCCGGCTGGAACGCGGCCCGCCACATCCTTTCGGGAGAAAGGGCATGA
PROTEIN sequence
Length: 514
MTSFDAIVIGAGHNGLAAATCLARSGRKVLVLEAADAPGGAARGREFAPGFRSAGLAHLVNRLDGAVARDIGLDLAGGDALLPTTVLDGSGRGVTLNGAYGETIEGVTAEEEAAFAALRGKLVFQAAILKRFLRRPPPQIGAISLGDLSTFAATGFSLIRKGRGEARDFLRMLLMNVADVADEYLADDRLKGLLAFDATLGIHLGPRSPTSLLGLYYRLTGDVAGRTGGQFVPAGGMASLAPAFVRAAEKAGVTIRCSVPVGRILVDRGRTSGGTEIAAPLVVSAIHPQTTFLHLVDPAESGTGFVRSVRNVRSFGNVAKLDLALDRIPSFEGLPAEARSGRIVLVRGMEQVETAFNPAKYGEFSPDPVMEITLPSLADPALAPAGGCTLSALVQYAPYRLKAGWETGKPAFLRIVLETLERHAPGIGTSVVAASLMTPVDIEAEYNLPGGHWHHGELQADQLLVNRPTGVASGYTTPIEGLYLASAGAHPGGGISGLPGWNAARHILSGERA*