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SCNpilot_expt_1000_bf_scaffold_16890_7

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 5335..6045

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD66_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 236.0
  • Bit_score: 435
  • Evalue 3.70e-119
  • rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR81717.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 236.0
  • Bit_score: 435
  • Evalue 5.10e-119
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 212.0
  • Bit_score: 292
  • Evalue 1.60e-76

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
GTGACCGTGCTGCTGAAAAATCCCAGGGGCAAGGTGACGGTGAAGATGCGGGCAGACGGGGCTGAACAGGGCTCGGGCGACGGCGGGAAGCGGGGGCGCAAGGCCTCCAAGGAAACGCGGCGGCAGCAGCTCATCGAGGCGACGATCGATTCGCTCGCCCGGCGCGGCTATTCCGACACCACGCTCGCGGACGTCGCCGACGGCGCCGGCCTTTCCCGCGGCATCGTCAACTTCCATTTCGAGAGCAAGGACAACCTGCTCGTCGCCACGCTGCAATACATGTCCGAGGAATATGCGGACCACTGGAACGCGGCGCTGGACAAGGCGGGGCCGAGCCTTGCCGGCCGCCTCTGGGCGCTGATCCATGCCGATTTCGACCGCAAGATCTGCACCAAGCGCAAGCTGGCCGCCTGGTGCGCCTTCTGGGGCGAGGCCAAGTCGCGGCCGACCTACCAGGCGCTGTGCGGCGCGCGCGACGTCAAGTACCAGGAAACGGTGATCTCGCTGTGCGCCGACCTCAAGGCCGAGGGCGGCTATGGCTATGAGCCGGAGCCCATGGCGCTTTCGCTCTGCGCCATGCTGGAGGGCCTGTGGCTGCGCCTGATGATGGGCGACGGCACGACGCGGGAAAAGGCGCTGGAGGCGGCCATCGCCTTCGTCGCCATCGCCTTCCCGCAGCATCTGACGATCCAGGGACCAAAACCACGATAG
PROTEIN sequence
Length: 237
VTVLLKNPRGKVTVKMRADGAEQGSGDGGKRGRKASKETRRQQLIEATIDSLARRGYSDTTLADVADGAGLSRGIVNFHFESKDNLLVATLQYMSEEYADHWNAALDKAGPSLAGRLWALIHADFDRKICTKRKLAAWCAFWGEAKSRPTYQALCGARDVKYQETVISLCADLKAEGGYGYEPEPMALSLCAMLEGLWLRLMMGDGTTREKALEAAIAFVAIAFPQHLTIQGPKPR*