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SCNpilot_expt_1000_bf_scaffold_17545_4

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 2386..2775

Top 3 Functional Annotations

Value Algorithm Source
IclR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI0003694465 similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 129.0
  • Bit_score: 214
  • Evalue 5.60e-53
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EYR83641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.7
  • Coverage: 129.0
  • Bit_score: 207
  • Evalue 1.20e-50
pcaR; Pca regulon regulatory protein PcaR similarity KEGG
DB: KEGG
  • Identity: 73.4
  • Coverage: 128.0
  • Bit_score: 186
  • Evalue 3.90e-45

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 390
ATGTCGATCAACCTGACGGCCGGCTCGCGCCTGCCGGCCTATTGCGCCTCGATGGGCCGCGTTCTGCTCGCCGCCCTTCCCGAAGCGGAAGCGCGCGCCATCATCGAGGCCTCCGACCGCAAGGCGAACACGCCTTTTACCAGGACGGAGCCGGATGCATTGATGGACGAGCTTTCCCGCGTGCGCCGGCAGGGCTATGCGCTCATCGACCAGGAACTGGAAATCGGCCTGCGCTCCATCGCCGTTCCACTTGTGAACGCCCGCGGCCGCGTCGTCGCGGCGCTGAACATCGGCGCACCGGCCGCCCATGCGGCGGCCGACGATATGGTCGAATGCTACCTGCCGGCCATGCGAGAGGTGCAAGCTTCATTGCGGCAGGTGCTGGCGTGA
PROTEIN sequence
Length: 130
MSINLTAGSRLPAYCASMGRVLLAALPEAEARAIIEASDRKANTPFTRTEPDALMDELSRVRRQGYALIDQELEIGLRSIAVPLVNARGRVVAALNIGAPAAHAAADDMVECYLPAMREVQASLRQVLA*