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SCNpilot_expt_1000_bf_scaffold_25990_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(782..1540)

Top 3 Functional Annotations

Value Algorithm Source
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 251.0
  • Bit_score: 492
  • Evalue 4.90e-136
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] similarity KEGG
DB: KEGG
  • Identity: 94.0
  • Coverage: 251.0
  • Bit_score: 487
  • Evalue 2.10e-135
Isocitrate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1K8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 251.0
  • Bit_score: 492
  • Evalue 3.50e-136

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 759
ATGATGAAGTTCATCGGCGATGACGGCAAGGAAATCGAATACGAAGTCTATGACGCCCCGTCCGCCGGCGTTGCCATGGGCATGTACAACCTCGACGATTCGATCACCGAATTCGCCCGCGCGTCGTTCAACTACGGCCTGCAGCGCAAGGTGCCGGTGTATCTCTCCACCAAGAACACCATCCTCAAGGTCTATGACGGCCGCTTCAAGGACATCTTCCAGCAGGTCTTCGACGCCGAATTCGCCGACAGGTTCAAGGAAGCCAAGCTCTGGTACGAGCATCGCCTGATCGACGACATGGTCGCCTCGGCGCTCAAGTGGTCCGGCGGCTATGTCTGGGCCTGCAAGAACTACGACGGCGACGTGCAGTCCGACATCGTGGCCCAGGGCTTCGGCTCGCTCGGCCTGATGACCTCGGTCCTGATGACGCCGGACGGCAAGACGGTCGAGGCGGAAGCCGCGCACGGCACGGTGACGCGCCACTACCGCCAGCACCAGAAGGGCGAGGAAACCTCGACCAACTCCATCGCCTCGATCTTCGCCTGGACCCGAGGCCTTGCCCACCGCGCCAAGCTCGACGGCAATCCGGAGCTCGCCAGGTTCGCCGACACGCCGGAGCGCGTCTGCGTCGACACGGTCGAAGCCGGCTTCATGACCAAGGACCTCGCGCTCCTCATCGGTCCCGACCAGCCGTGGCTCTCCACCACCGGCTTCCTCGACAAGATCGACGAGAACCTCCGGAAGGCCATGGCCGCCTGA
PROTEIN sequence
Length: 253
MMKFIGDDGKEIEYEVYDAPSAGVAMGMYNLDDSITEFARASFNYGLQRKVPVYLSTKNTILKVYDGRFKDIFQQVFDAEFADRFKEAKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNPELARFADTPERVCVDTVEAGFMTKDLALLIGPDQPWLSTTGFLDKIDENLRKAMAA*