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SCNpilot_expt_1000_bf_scaffold_25990_5

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 2927..3499

Top 3 Functional Annotations

Value Algorithm Source
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.2
  • Coverage: 186.0
  • Bit_score: 351
  • Evalue 7.90e-94
tRNA (Cytidine/uridine-2'-O-)-methyltransferase TrmJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCN9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.2
  • Coverage: 186.0
  • Bit_score: 351
  • Evalue 5.60e-94
RNA methyltransferase, TrmH family, group 1 similarity KEGG
DB: KEGG
  • Identity: 79.3
  • Coverage: 184.0
  • Bit_score: 294
  • Evalue 2.60e-77

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGCTCCGGGGATATTTGGGCATGGCAGGCACGAACAGCGAACGCACGCTGATCGCCGAAGGACCGGCGATCATCCTCGTTCATCCGCAACTGGGCGAGAACATCGGCATGGTGGCGCGCGCCATGGCGAATTTCGGGCTGGCGGAACTGCGCCTCGTCAACCCGCGCGACGGCTGGCCGAGCGAGAAGGCGATCTCCGCCGCCAGCAAGGCCGATCACGTCATCGAGGCCGCCAAGGTCTATCCCTCGCTGGAAGAGGCCGTCTCCGATCTCGAATTCGTCTATGCCACCACGGCGCGCGCCCCCTACGGCTACAAGGAGGTCCGCTCCCCGGTCGTCGCCGCCGACGACCTGCGCACCCGCTTCCGGGCCGGGCAGAAGACCGGAATCCTCTTCGGCCGCGAGCGCACGGGCCTCACCAACGAGGAGATCGCGCTTGCCGACGAACTGGTGACCTTCCCGGTCAATCCCGCTTTCGCCTCGCTCAATCTCGCCCAGGTCGTGCTCCTCATGAGCTACGAGTGGATGAAGAGCGGCCTTGCCTCCGTCGAGGACACGCCCTTCGACGCGCTG
PROTEIN sequence
Length: 191
MLRGYLGMAGTNSERTLIAEGPAIILVHPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKAISAASKADHVIEAAKVYPSLEEAVSDLEFVYATTARAPYGYKEVRSPVVAADDLRTRFRAGQKTGILFGRERTGLTNEEIALADELVTFPVNPAFASLNLAQVVLLMSYEWMKSGLASVEDTPFDAL