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SCNpilot_expt_1000_bf_scaffold_2049_3

Organism: SCNPILOT_EXPT_1000_BF_Afipia_62_8

partial RP 39 / 55 MC: 2 BSCG 39 / 51 MC: 2 ASCG 11 / 38
Location: comp(2786..4909)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=2 Tax=Bradyrhizobiaceae RepID=F7QFT6_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 95.0
  • Coverage: 664.0
  • Bit_score: 1203
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.0
  • Coverage: 664.0
  • Bit_score: 1203
  • Evalue 0.0
rpoD2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 91.6
  • Coverage: 656.0
  • Bit_score: 1173
  • Evalue 0.0

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Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2124
ATGGCCACCAAGGCAAAGACGGCAGCGATCAAGGACAAAGAGAAGGATCAGAAGGCCGCTGAGACTCCTGAGAAAGACAGCGCCGACGCGCCGTCGCCTTTGCTCGACCTGTCCGACGCCGCCGTCAAGAAGATGATCAAGCAGGCCAAGAAGCGCGGCTTCGTGACCTTCGATCAGCTCAACGAAGTGCTGCCTTCCGACACGACCTCGCCCGAACAGATCGAAGACATCATGGCGATGCTCTCCGACATGGGCATCAACGTCTCCGAATCCGACGACGCCAACGACGAGGACGAGGAGAAGCAGGAGGACGGCGACGATGAGACCGATAACGAACTCGTCGAGGTCACCTCCAAGGCCGTCACCGAAACCAAGAAATCGGAGCCCGGCGAGCGCACCGACGATCCCGTGCGCATGTATCTGCGCGAGATGGGCACCGTCGAGCTGCTGTCGCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAGGCGATGATCGCGGGGCTGTGCGAAAGCCCGCTGACCTTCCAGGCCATCATCATCTGGCGCGACGAACTCAACGAAGGAAAGATCTTCCTTCGCGACATCATCGACCTTGAAGCGACTTACGCCGGCCCCGAGGGCAAGAACGGCCTCAACCCGGCGATGATCGCCGGTCCCGCGGGCCCCGACGGCCAGCCGACCAACGCCGTGATCAATGCCGACGGCACCGTGCAGGTGATCGCCGCGGTGCAGCCCGCGCCGCCCGCCGCGCCGCCGTCGCCGACGCCGTTCCGCCCCGCGCCTGCCGCGGGTGATGCCGGCGCAGGTCCCTCGCCCGAGGAGGACGAGGACGACGAGTTCGAGAACCAGATGTCGCTGGCGGCCATCGAGGCCGAGCTGAAGCCGAAGGTGGTCGAGACATTCGACAAGATCGCCTCCGAGTACAAGAAGCTGCGCCGCCTGCAGGAGCAGGACATCCAGAACCAGCTTCAGAACGAGTCGCTCTCGCCTGCGCAGGAACGCAAGTACAAGAAGCTGAAGGACGAGATCGTCGTCGAGGTGAAGTCGCTGCGCCTCAACCAGGCGCGCATCGACAGCCTCGTCGAGCAGCTCTACGACATCAACAAGAAGCTGGTGTCCTATGAAGGCCGCCTGTTCCGCCTCAGCGACAGCCACGGCGTCGGCCGCGAAGACTTCCTGAAGAACTATCAGGGCTCGGAGCTTGATCCGCGCTGGCTCAACCGCGTCTCGAAACTGGCCGCCAAGGGCTGGAAGAATTTCGTCGCGGTGGAGAAGGACCGCATCAAGGAACTGCGCCAGAACATTCAGGAGCTTGCGGCGCTGACCGGCCTCGAGATCGGCGAATTCCGCAAGATCGTGCTCGGCGTGCAGAAGGGCGAGCGCGAGGCGCGGCAGGCGAAGAAGGAAATGGTGGAGGCCAACCTGCGCCTCGTGATTTCCATCGCCAAGAAATACACCAACCGCGGCCTGCAGTTCCTCGATCTCATTCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCGACAAGTTCGAATACCGTCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGTCAGGCCATCACCCGCAGCATTGCTGACCAGGCAAGAACCATCCGCATTCCGGTGCACATGATCGAGACGATCAACAAGATCGTGCGCACTTCGCGCCAGATGCTGAACGAGATCGGCCGCGAGCCGACGCCGGAAGAACTGGCCGAAAAGCTCGGCATGCCGCTGGAGAAGGTGCGCAAGGTTCTCAAGATCGCCAAGGAGCCGCTCTCGCTGGAGACGCCGGTGGGCGACGAGGAGGATTCACACCTCGGCGATTTCATCGAGGACAAGAACGCGGTGCTGCCGATCGACGCGGCGATCCAGTCGAACCTGCGCGAAACCACGACGCGCGTGCTCGCCTCGCTCACCCCGCGTGAGGAGCGCGTGCTGCGTGCGCTTCGGCATCGGCATGAACACCGACCACACGCTGGAAGAAGTCGGCCAGCAGTTCTCGGTGACCCGCGAACGTATTCGTCAGATCGAGGCGAAGGCGCTGCGGAAGCTGAAGCATCCGAGCCGGAGCAGAAAGCTGCGGAGCTTCCTCGATAA
PROTEIN sequence
Length: 708
MATKAKTAAIKDKEKDQKAAETPEKDSADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQLNEVLPSDTTSPEQIEDIMAMLSDMGINVSESDDANDEDEEKQEDGDDETDNELVEVTSKAVTETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPEGKNGLNPAMIAGPAGPDGQPTNAVINADGTVQVIAAVQPAPPAAPPSPTPFRPAPAAGDAGAGPSPEEDEDDEFENQMSLAAIEAELKPKVVETFDKIASEYKKLRRLQEQDIQNQLQNESLSPAQERKYKKLKDEIVVEVKSLRLNQARIDSLVEQLYDINKKLVSYEGRLFRLSDSHGVGREDFLKNYQGSELDPRWLNRVSKLAAKGWKNFVAVEKDRIKELRQNIQELAALTGLEIGEFRKIVLGVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRALRHRHEHRPHAGRSRPAVLGDPRTYSSDRGEGAAEAEASEPEQKAAELPR*