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SCNpilot_expt_1000_bf_scaffold_3450_3

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_64_6

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 4 ASCG 7 / 38
Location: comp(1848..3551)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969, ECO:0000313|EMBL:CPR21815.1}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969, ECO:0000313|EMBL:CPR21815.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.7
  • Coverage: 563.0
  • Bit_score: 889
  • Evalue 3.10e-255
mfd; transcription repair coupling protein, ATP-dependent helicase (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 563.0
  • Bit_score: 885
  • Evalue 1.00e-254
transcription-repair coupling factor n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361238E similarity UNIREF
DB: UNIREF100
  • Identity: 78.6
  • Coverage: 566.0
  • Bit_score: 899
  • Evalue 2.10e-258

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Notes

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Taxonomy

No taxonomy information

Sequences

DNA sequence
Length: 1704
GTGCTCGAGGCGCCCGAAGGCGCCTATGCCGAGTTCGTGACGCGCTTTCCGCACCAGGAGACCGAGGATCAGGCCCAGAGCATCGATGCCGTGCTCGGCGACCTCACTTCGGGCCGCCCCATGGACCGGCTCGTGTGCGGCGACGTCGGTTTCGGCAAGACGGAAGTCGGCCTGCGCGCGGCGTTCATTGCCGCCATGGCCGGCTTGCAGGTCGCCGTCGTCGTCCCAACGACTCTCCTTGCGCGCCAGCACTACAAGACCTTCGTCGAGCGCTTCAAAGGCCTGCCCATCCGCATTGGCCGCGCCTCGCGCCTCGTCAGCCCGAAGGAGCTTGCGGAAGTGAAAGCCGGCCTCAAGGACGGCACGATCGACATCGTCGTCGGCACGCACGCGCTGCTCGGCAAGCAGATCCAGTTTGCCCGTCTCGGCCTGCTCATCGTCGACGAGGAGCAGCACTTCGGCGTCGGCCACAAGGAGCGCCTGAAGCAGCTCAAGGAAGACGTCCACGTTCTCACGCTCACGGCAACGCCGATCCCGCGCACGCTCCAACTCGCGCTCTCGGGCGTGCGCGAGCTCTCGCTCATCACGACACCGCCGATCGATCGCCTCGCTGTGCGGACGTACATCTCGCCCTTCGATCCGATCATCATTCGCGAGGCCCTGCGCCGTGAGCGCCATCGTGGCGGCCAGTCCTTCTATGTCGTGCCGCGTATTGCCGATCTCGACGACGTGGCCGAATTCCTCACCGAGGAAGTGCCGGAGCTGCGCGTCGTGCGCGCGCACGGGCAACTGTCGCCTTCGCAGCTCGAAGATGTCATGAGTGCGTTCTACGACGGGCAGTACGATGTGCTGCTCTCGACGGCGATCGTGGAATCCGGCCTCGACATTCCGAATGCCAATACGCTGATCGTGCATCGCGCGGACATGTTCGGCCTCGCCCAGCTCTATCAGCTCCGCGGCCGCGTCGGGCGCTCCAAGACACGTGCCTATGCCTACCTGACCACACCGCCCGGCAAGCGCCTCACCGAGGGCGCCGAGAAGCGGCTCAAGGTCCTCCACTCGCTCGATACGCTGGGCGCCGGATTCTCGCTCGCCTCGCACGACCTCGATATTCGCGGCGCCGGCAACCTACTCGGCGACGAGCAGTCCGGCCATATTCGCGAGGTCGGCTTCGAGTTGTATCAGTCCATGCTCGAGGAGGCGATCGAGGCCATCCGCGGCGGCGACCTCGGCGATATCGACGAGCAATGGAGCCCGCAGATCACGCTCGGCACCCCCATGCTGCTGCCCGAGGGATACGTCGCCGACCTGCAGGTGCGCCTCGGCCTCTACCGCCGCCTCGCCACGCTCAAGACGCGCGAGGAGATCGACGCCTTTGCCGATGAGCTGATCGACCGCTTCGGGCCCCTCCCCGACGAGGTCGAGCATCTCCTGGATGTCATGGAGATCAAGGCGCTCTGCCGCCGCGCCGGCATTGCCGAGATCGATGCCGGACCGAAGGGGGCCTCGATCCTTTTCCGCAAGGGCCAGTTCGCCAATGCGCAAGGCCTCGTCGCCTTCATCCAGGCGTCAAGAGGACTGCTTAGGCTCATGCCGGATCAGAAGCTCGTCTTCAAGGCGGACTGGGAGGTGCCGGCCGCCCGGCTCAAAGGCGTTCGCGGACTCGTGCAGGAGCTGGCGAAGGTCGCGGAGAGTGGCCAATAA
PROTEIN sequence
Length: 568
VLEAPEGAYAEFVTRFPHQETEDQAQSIDAVLGDLTSGRPMDRLVCGDVGFGKTEVGLRAAFIAAMAGLQVAVVVPTTLLARQHYKTFVERFKGLPIRIGRASRLVSPKELAEVKAGLKDGTIDIVVGTHALLGKQIQFARLGLLIVDEEQHFGVGHKERLKQLKEDVHVLTLTATPIPRTLQLALSGVRELSLITTPPIDRLAVRTYISPFDPIIIREALRRERHRGGQSFYVVPRIADLDDVAEFLTEEVPELRVVRAHGQLSPSQLEDVMSAFYDGQYDVLLSTAIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYAYLTTPPGKRLTEGAEKRLKVLHSLDTLGAGFSLASHDLDIRGAGNLLGDEQSGHIREVGFELYQSMLEEAIEAIRGGDLGDIDEQWSPQITLGTPMLLPEGYVADLQVRLGLYRRLATLKTREEIDAFADELIDRFGPLPDEVEHLLDVMEIKALCRRAGIAEIDAGPKGASILFRKGQFANAQGLVAFIQASRGLLRLMPDQKLVFKADWEVPAARLKGVRGLVQELAKVAESGQ*