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SCNpilot_expt_1000_bf_scaffold_6006_20

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_64_6

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 4 ASCG 7 / 38
Location: 26272..26823

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JE04_HYPSM similarity UNIREF
DB: UNIREF100
  • Identity: 54.9
  • Coverage: 175.0
  • Bit_score: 195
  • Evalue 6.50e-47
rimM; ribosome maturation factor rimM; K02860 16S rRNA processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 54.9
  • Coverage: 175.0
  • Bit_score: 195
  • Evalue 2.00e-47
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.9
  • Coverage: 175.0
  • Bit_score: 195
  • Evalue 9.10e-47

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Taxonomy

Hyphomicrobium sp. MC1 → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
ATGCCGGGCAGGCCAGGCGACGAGGATCGGGACGGGCGCATTCTGCTTGGCCGGATCGTCGCCGCACATGGCGTGCGCGGCGAGGTGCTCGTGCGCTCCTATGCCGACGATCCGGCGGCGATCGGTGCCTATGGGCCGCTCGCCGCGCCGGCGGCCAATCGCACGCTCGAGCTTCGCGTACTACGCGTGACGGCCAAGGGGGTCGTTGCGCGGATTGCCGGTATCGGCGATCGCAATGCTGCCGAGGCGCTGGCTGGGATCGACCTCTACATCGATCGCGCGCAGCTCCCGGCGGCCGGTGAAGACGAGTTCTATCACGCCGACCTGATCGGGCTCGCCGCCGTCGCCCCCGATGGTGCCGAGATCGGCCGCGTCGTGGCCGTTCACAACTTCGGTGCCGGTGATTTGATCGAGGTCGCTCTTGCGGCCTCGCGGCGTACCGAGCACATACCCTTCAATGATCGCTTCGTGCCTGAGGTCGACGTGGCTGCGGGCAGGATCGTGGTCAGCTTGCCGGAGCCCTCCGACGAGGACGGGCCTCCACAAGGGTAA
PROTEIN sequence
Length: 184
MPGRPGDEDRDGRILLGRIVAAHGVRGEVLVRSYADDPAAIGAYGPLAAPAANRTLELRVLRVTAKGVVARIAGIGDRNAAEALAGIDLYIDRAQLPAAGEDEFYHADLIGLAAVAPDGAEIGRVVAVHNFGAGDLIEVALAASRRTEHIPFNDRFVPEVDVAAGRIVVSLPEPSDEDGPPQG*