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SCNpilot_cont_500_bf_scaffold_6948_3

Organism: SCNPILOT_CONT_500_BF_Afipia_63_5

partial RP 23 / 55 MC: 10 BSCG 23 / 51 MC: 9 ASCG 8 / 38 MC: 4
Location: 1921..2169

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=5 Tax=Bradyrhizobiaceae RepID=HFQ_RHOP5 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 5.90e-40
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 1.90e-40
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 8.30e-40

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Taxonomy

Bradyrhizobium sp. LTSP885 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCGGCAGACCGCGCACAGAACTTACAAGACACTTTTCTCAATCACGTTCGCAAGACCAAAACGCCGTTGACGATCTTTCTGGTCAACGGAGTCAAGCTGCAGGGGATCGTCACCTGGTTCGACAACTTCTGCCTGCTGCTCCGGCGCGACGGACATTCGCAGCTTGTCTACAAGCATGCGATCTCCACCATCATGCCGGGCGCTCCGATCCAGTTGTTCGAGGGCGGCGAGGACGCTCCAGCTTGA
PROTEIN sequence
Length: 83
MAADRAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKHAISTIMPGAPIQLFEGGEDAPA*