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SCNpilot_cont_500_bf_scaffold_16377_3

Organism: SCNPILOT_CONT_500_BF_Afipia_63_5

partial RP 23 / 55 MC: 10 BSCG 23 / 51 MC: 9 ASCG 8 / 38 MC: 4
Location: comp(1469..2866)

Top 3 Functional Annotations

Value Algorithm Source
channel protein TolC n=1 Tax=Afipia birgiae RepID=UPI000371F167 similarity UNIREF
DB: UNIREF100
  • Identity: 91.6
  • Coverage: 452.0
  • Bit_score: 799
  • Evalue 1.50e-228
  • rbh
TolC family type I secretion outer membrane protein {ECO:0000313|EMBL:EKS39977.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.4
  • Coverage: 464.0
  • Bit_score: 799
  • Evalue 3.50e-228
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein similarity KEGG
DB: KEGG
  • Identity: 80.4
  • Coverage: 465.0
  • Bit_score: 716
  • Evalue 6.60e-204

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Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1398
ATGAAGCTCGGCGCGGGCGTAGCTCTCGCTGCCCTTTTGATGAGTCACGCGATGGCCACCCCGGCCATGGCGGACACGATCGAGGCAGCGCTTATTCGCGCATATCAAAACAATCCGCAGTTGAACGCACAGCGTGCATCAGTACGCGCCACCGACGAAAACGTTCCGCAGGCACTGTCCGGCTACCGGCCGAAAGTCGCCGTCACGGCGAGCGCGGGAACCCAATACACCGACACCCAGACCAACACGCTGAATGGGAGCGGCCAGCTAAGCCAGATCGGTCTTCACGGCGTCAACGCGCCGCGCTCCGTCGGCGCAACCATTTCGCAAACGCTGTTCAACGGCGGCCAGACCGGCAACCGGACCCGTGCGGCGGAGAGCCAGGTGTCGGCCGCGCGCGAAGGCCTGCGTGTGCTCGAGCAGACCGTGCTGTTCGCGGCTGCGACCATCTACATGGATTACCTGCGCGACTACGCCATTGTCGAAGTTCAGCGCAGCAACGTGCGCGTGCTGGAACAGACGCTCAAGCAGACCCGCGACCGCTTCAATGTCGGCGAAGTCACCCGCACCGACGTGGCGCAGTCCGAAGCCCAGCTCGCGGCGGGCCGCACCCAGCTTCTGACCGCCGAATCGACCCTCACGACGACGCGCGCGAATTTCCGCCGCATCATCGGCAACGATCCGTCGAACCTCGCGCCCGGCTCGCCCGTGGACCGCTTCCTGCCGACGACGCTGGCCGCGGCGGTCGATCGGGGCCTGCTGGAAAACCCGAACGTCACCGCCGCGATGTACGGCATCGACGTCAGCTTCCTGCAGGTGAAGGTCAACGAGGGCGCGCTGTTCCCGACCGTCACTCTTCAGGGCAGCGTCCAGCAGTCCTTTGAAAGCACCATGGCGACCTACCGTGCGTTCGGCGCATCCGCCGTCGCGCAGGTGTCGGTGCCGGTGTTCCAGGGCGGCGCAGAATACGCGCTGATCCGTCAGTCGAAGGAAACGCTGGCGCAGCAGCGCCTGAACCTCGAACAGGTGCGCGATCAGACCCGCGCCACCGTCGCGCAGGCCTGGGGCCAGCTCGTCGCCGGCAAGGCGCAGGTGTCGTCCGCGCAGTCGCAGGTGACGGCGTCGGAAATCGCACTGAACGGCGTTCGCGAAGAGGCGAGGGTCGGGCAGCGCACCACGCTCGACGTCCTGAACGCACAGCAGGCGCTGGTGAACGCGCGCGTCGCGCTCGTGACCGCGCAGCATGACCGCGTGGTGGCCTCGTACAGCGTGCTCAACTCGATCGGCCGCCTGTCGCCGAGCGTGCTGAACCTCGCGACCAACGTTTACGATCCGAGCGTCCACTATCATCAGGTCCGCGACAGCTGGTTCGGCGTCCGGACGCCTGACGGCCGCTGA
PROTEIN sequence
Length: 466
MKLGAGVALAALLMSHAMATPAMADTIEAALIRAYQNNPQLNAQRASVRATDENVPQALSGYRPKVAVTASAGTQYTDTQTNTLNGSGQLSQIGLHGVNAPRSVGATISQTLFNGGQTGNRTRAAESQVSAAREGLRVLEQTVLFAAATIYMDYLRDYAIVEVQRSNVRVLEQTLKQTRDRFNVGEVTRTDVAQSEAQLAAGRTQLLTAESTLTTTRANFRRIIGNDPSNLAPGSPVDRFLPTTLAAAVDRGLLENPNVTAAMYGIDVSFLQVKVNEGALFPTVTLQGSVQQSFESTMATYRAFGASAVAQVSVPVFQGGAEYALIRQSKETLAQQRLNLEQVRDQTRATVAQAWGQLVAGKAQVSSAQSQVTASEIALNGVREEARVGQRTTLDVLNAQQALVNARVALVTAQHDRVVASYSVLNSIGRLSPSVLNLATNVYDPSVHYHQVRDSWFGVRTPDGR*