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SCNpilot_cont_500_bf_scaffold_3049_12

Organism: SCNPILOT_CONT_500_BF_Actinobacteria_69_13

partial RP 37 / 55 BSCG 38 / 51 ASCG 12 / 38 MC: 1
Location: comp(10656..11366)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 region 2 n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JKG4_RHOER similarity UNIREF
DB: UNIREF100
  • Identity: 42.2
  • Coverage: 185.0
  • Bit_score: 133
  • Evalue 3.90e-28
Sigma factor, RNA polymerase ECF-family {ECO:0000313|EMBL:CCH80142.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.3
  • Coverage: 162.0
  • Bit_score: 140
  • Evalue 3.40e-30
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.6
  • Coverage: 185.0
  • Bit_score: 131
  • Evalue 4.60e-28

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Taxonomy

Tetrasphaera japonica → Tetrasphaera → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGATTCGGTCGATGCCGGACCTTACCGGGTATGACGATGTTCGCGAGGCGGGCCACGACCGGCACCCGATGCCCGGGAGCGTGCTCATGACAAGGACCGCATCGCCCCAGCAGACGCGCACGGCGGCGGACGTGCCGGACACGGCGGACCTGGTGAGCGATCTGTTCCGCCGATACGCGAACCGGGTCTACGGCTACGTCCGGCTGCGCACCACCCCCGAGATCGCCGACGACGTCGTAGCGGACACGTTCCTCACCGCCTGGCGGTTGCGCGACCGCATTCCCGAGGAACCCCTGCCGTGGCTATTGGTCGTGGCGCACAACATGCTGGCCAACCGCCATCGGGCCGTCGGGCGGTCCACCCGGCTGGTCGTGGCCATGGCAAGGGTGGAACAACTCGCGGGATACCAGCCCGCGGCCGAGGACGCGGTGGTGGCACGCGACGAGGTTCTCGGGGTCCTCGCCCGGCTGACGGACGACGAACGCGGCGCCGTACTGCTGGTGGCCTGGGATGGGCTCTCGCACCGTGATGCCGCCGCCGTCGCCGGATGCAGCGAACGCACCCTCGCCCGCCGACTGCGCCGGGCGCGGTACCACCTCCGCGACCTGGCGGCGCCGGCCACGGTCGCAACTGCAGCCGCGACCACTGCCGATCCGATGAACCCCGGCTCTTCCACCGATGCCACTGACCCGACGAAGGAGTCTTCATGA
PROTEIN sequence
Length: 237
MIRSMPDLTGYDDVREAGHDRHPMPGSVLMTRTASPQQTRTAADVPDTADLVSDLFRRYANRVYGYVRLRTTPEIADDVVADTFLTAWRLRDRIPEEPLPWLLVVAHNMLANRHRAVGRSTRLVVAMARVEQLAGYQPAAEDAVVARDEVLGVLARLTDDERGAVLLVAWDGLSHRDAAAVAGCSERTLARRLRRARYHLRDLAAPATVATAAATTADPMNPGSSTDATDPTKESS*