ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.99 Longest contig: 61.43 Kbp Bin length: 55.35 Mbp GC content: 62.88 %

Contigs count: 29871 Features count: 77800 rRNAs count: 23 tRNAs count: 272

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 16

Displaying items 29751-29800 of 29871 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
04302015_21_scaffold_24891 Phylum: Proteobacteria (66.67%)	3	1275 bp	70.59	2.94	104.71
04302015_21_scaffold_18782 Species: R_OD1_Adlerbacteria_54_21b (50%)	2	1481 bp	52.46	4.25	104.73
04302015_21_scaffold_23742 Phylum: Proteobacteria (66.67%)	3	1306 bp	62.17	4.59	104.75
04302015_21_scaffold_25720	3	1251 bp	67.63	4.92	104.80
04302015_21_scaffold_37469 Species: mine drainage metagenome (50%)	2	1016 bp	59.74	2.66	104.82
04302015_21_scaffold_15218	4	1657 bp	72.18	11.59	104.83
04302015_21_scaffold_37828	2	1010 bp	46.53	2.67	104.85
04302015_21_scaffold_27399 Species: Acidisphaera rubrifaciens (66.67%)	3	1210 bp	69.59	4.09	104.88
04302015_21_scaffold_9290 Domain: Bacteria (50%)	4	3300 bp	60.30	5.09	104.91
04302015_21_scaffold_28894 Species: CG_CPR09_01 (50%)	2	1175 bp	55.40	2.68	104.94
04302015_21_scaffold_12866	5	2344 bp	62.20	5.63	104.95
04302015_21_scaffold_15431 Species: Acidisphaera rubrifaciens (66.67%)	3	1646 bp	72.24	4.65	104.98
04302015_21_scaffold_39613 Species: mine drainage metagenome (50%)	4	1357 bp	74.13	6.30	105.01
04302015_21_scaffold_37558 Domain: Bacteria (100%)	3	1014 bp	63.81	4.29	105.03
04302015_21_scaffold_23044 Species: Acidithiobacillus ferrooxidans (66.67%)	3	1328 bp	60.32	5.20	105.05
04302015_21_scaffold_34670 Species: Candidatus Accumulibacter sp. BA-92 (50%)	2	1062 bp	56.12	3.81	105.09
04302015_21_scaffold_29635 Species: Acidiphilium sp. PM (50%)	2	1159 bp	71.44	4.40	105.09
04302015_21_scaffold_73185 Species: Sideroxydans lithotrophicus (50%)	2	1119 bp	60.14	5.09	105.09
04302015_21_scaffold_34986 Species: CSP1_4_Chloroflexi (100%)	2	1056 bp	77.08	3.41	105.11
04302015_21_scaffold_69284 Species: Acidiphilium multivorum (50%)	2	1107 bp	66.49	3.52	105.15
04302015_21_scaffold_36814 Species: marine sediment metagenome (50%)	2	1027 bp	60.86	3.21	105.16
04302015_21_scaffold_27022	4	1218 bp	56.98	2.22	105.17
04302015_21_scaffold_96806 Species: R_OD1_Wolfebacteria_42_16 (50%)	2	1004 bp	54.18	4.48	105.18
04302015_21_scaffold_66285 Species: mine drainage metagenome (50%)	2	1192 bp	56.46	5.54	105.20
04302015_21_scaffold_22146 Species: Acidisphaera rubrifaciens (50%)	2	1357 bp	63.08	4.31	105.23
04302015_21_scaffold_24396	3	1288 bp	56.91	5.36	105.28
04302015_21_scaffold_18330 Phylum: Actinobacteria (100%)	3	1501 bp	67.36	3.80	105.33
04302015_21_scaffold_25572	6	1256 bp	60.75	5.85	105.33
04302015_21_scaffold_5066 Species: Acidiphilium multivorum (50%)	2	2848 bp	58.67	7.32	105.34
04302015_21_scaffold_23061	5	1327 bp	61.94	6.33	105.35
04302015_21_scaffold_22794 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1335 bp	60.00	4.04	105.39
04302015_21_scaffold_5789 Domain: Bacteria (50%)	4	2667 bp	58.46	4.84	105.40
04302015_21_scaffold_34149 Species: RBG_16_RIF_CHLX_72_14_curated (50%)	2	1070 bp	72.24	3.64	105.42
04302015_21_scaffold_36039	2	1038 bp	57.03	2.89	105.49
04302015_21_scaffold_27190 Domain: Bacteria (100%)	3	1214 bp	63.59	3.71	105.52
04302015_21_scaffold_34139 Species: R_Gamma2_65_16 (50%)	2	1071 bp	66.76	3.50	105.60
04302015_21_scaffold_21464 Species: RBG_16_Zixibacteria_53_22_curated (50%)	2	1380 bp	66.45	4.13	105.65
04302015_21_scaffold_36884 Species: Bradyrhizobiaceae bacterium SG-6C (50%)	2	1025 bp	73.76	4.83	105.66
04302015_21_scaffold_38340 Species: Sulfuricella denitrificans (50%)	2	1002 bp	62.77	2.99	105.69
04302015_21_scaffold_19335 Domain: Bacteria (66.67%)	3	1459 bp	52.71	3.60	105.69
04302015_21_scaffold_9988 Phylum: Proteobacteria (60%)	5	2047 bp	61.06	4.40	105.81
04302015_21_scaffold_6230 Species: Roseomonas cervicalis (50%)	2	2572 bp	68.08	4.14	105.91
04302015_21_scaffold_28781 Species: mine drainage metagenome (50%)	2	1178 bp	71.39	10.06	105.94
04302015_21_scaffold_31158 Species: Methylobacterium nodulans (50%)	2	1127 bp	69.57	4.53	105.95
04302015_21_scaffold_26055	3	1243 bp	58.33	3.26	105.95
04302015_21_scaffold_26566 Species: Gluconacetobacter diazotrophicus (50%)	2	1806 bp	66.22	3.99	105.98
04302015_21_scaffold_25644 Species: Conexibacter woesei (50%)	2	1254 bp	70.41	2.51	105.98
04302015_21_scaffold_26301 Species: CG_Woesearch_03 (50%)	2	1237 bp	75.51	3.76	105.98
04302015_21_scaffold_13586 Order: Gallionellales (50%)	4	1757 bp	57.48	2.90	106.03
04302015_21_scaffold_31494 Domain: Bacteria (66.67%)	3	1120 bp	56.52	2.95	106.07

Displaying items 29751-29800 of 29871 in total

04302015_21_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

04302015_21_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help