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SCNpilot_expt_1000_bf_scaffold_1189_curated_13

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(12059..15127)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.1
  • Coverage: 999.99
  • Bit_score: 1643
  • Evalue 0.0
Rne/Rng family ribonuclease; K08300 ribonuclease E [EC:3.1.26.12] similarity KEGG
DB: KEGG
  • Identity: 68.4
  • Coverage: 999.99
  • Bit_score: 1297
  • Evalue 0.0
Ribonuclease E n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDT5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 82.1
  • Coverage: 999.99
  • Bit_score: 1643
  • Evalue 0.0

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3069
GTGACCCGGCCGCGCGCCATGCGCTGGCCGCCGAACGTCCCGTTCGCCGTCAAGAGTTCCAAAATGCCAAACAAAATGCTCATCGATGCCACCCACCCGGAAGAAACCCGGGTGGTCGTGGTCCGCGGAAACCGCGTCGAGGAATTTGATTTCGAGTCTGCCCAGCGCAAGCAACTGCGCGGCAACATCTATCTCGCCAAGGTCACCCGCGTCGAGCCGTCGCTGCAGGCCGCCTTCATCGAATACGGCGGCAACCGCCACGGCTTTCTCGCCTTCAGCGAAATCCATCCGGACTACTATCAGATCCCGGTCGCTGACCGTCAGGCCCTGATCGAGGCCGACGAGCGCGCGCATCGCGAGGCCGAGGAAGAGTCGGAAAACCGCTCCAGCCGCCGCCGCTCGCGCCATCGCAACTCCCGCCGCCGCGACCGCGGCGAGCGCGTTCAGAGCGAGATCGTCGAAGGCGCCGCGCCCGACGCCGAAGCCGGCATATCGGCGAACACCATTCAGGTTGGCGATCACGATCCGGAACATGCGCACGACGAGGCGCATGCCGGTCACGCGCACGACGCGCCGCATGACGAACATGACCATGTGCACGGTGAAGCGCATGACGCCGCGACCGCTGCCGGCGAACATCATGAAGAACATCCCGCCGACGACGCACAGCCCGTGGCCTCCGCAGAGGCGTCTGCGCATGACGTCGCGCAGGAGAGCGCCCACGACGAGCCTGTGGCCCATGACGATCACGGGCATGATGATCACGAACACGACGATCATCATCAGGAAGCGCTTGCGCACGACGACGTGCACGAGAGCGACGACGCCCCTCACGGCGACGATCATCACGCGGACGACGAGCATCATTCGGACGATGCCGATGGCGAGGATGATGAAGACGGCGAGGATGCCGAGGAAGAACACGTCGAATCCGTCGGCGGCGACGATGTGCTGGAGGAAGTTCCGGAGCGCGCTTTCCGTCCTCGCCGCCAGTACAAGATTCAGGAAGTCATCAAGCGCCGCCAGGTGATGCTGGTTCAGGTCGTGAAGGAAGAGCGCGGCAACAAGGGCGCTGCGCTCACGACCTATCTCTCGCTCGCCGGTCGCTACGCCGTTCTGATGCCGAACACCGCGCGCGGCGGCGGCATCAGCCGCAAGATCACCTCGGCGCAGGACCGCAATCGCCTTAAGGACGTGGTGCAGGATCTCGATGTGCCGGAGGGTATGGGGATCATCCTGCGCACCGCGGGCGCGTCCCGCACCAAGCCCGAGATCAAGCGCGATTTTGAATACCTGATCCGGATGTGGGAGACCGTCCGCGACACCACGCTGCGCTCGCAGGCGCCGACTCTCGTTTACGAAGAAGGGTCGCTGATCAAGCGTTCGCTGCGCGATCTCTACAACAAGGAGATCGACGAAGTTCTGGTTGCCGGCGAGTCCGGCTTCACCGAAGCTCGCGACTTCATGAAGATGCTGATGCCGAGCAATGTCCGCTCGGTGAAACAGTATCGCGACGGCCAGCCGCTGTTCTCGCGCATGGGCGTGGAGAGCCAGCTCGATGCGATGTTCTCCCCGACCGTGACGCTCAGGTCCGGCGGCTACATCGTCATCAACCAGACCGAGGCGCTGGTTTCGATCGACGTCAATTCCGGCCGCTCGACGCGCGAGCACCACATCGAGGACACCGCGCTCAAGACCAATCTTGAAGCCGCGGAAGAAGTGGCGCGGCAGCTTCGGCTGCGCGACCTGGCGGGCCTGATCGTCATCGACTTCATCGATATGGACGAGAAGCGCAACAACCGCGCAGTCGAGCGCAAGCTCAGCGACTGTCTGCGGCAGGATCGCGCGCGCATCCAGGTCGGCCGCATCTCGCATTTCGGCCTGCTGGAAATGTCGCGCCAGCGCATCCGCGCCAGCGTGCTGGAAAGCTCTACCGAGCCCTGCCCGCATTGCGGCGGCACGGGGCATGTCCGCTCGGTTTCGTCCGTCGCGCTGCAATTGCTGCGCGGCCTTGAAGAAACCCTGATGAAGGGTCCGACCCATAATCTCACGGTACGCACGCGCACCGACGTCGCGCTGTATGTGCTGAATCACAAGCGCGGTCATCTGCGCGATCTGGAAAACAGCTTCAAGGTCTCGCTGGCGGTGATCGCCGATCCGACCATCGCCGGTCAGCAAGCCTATGTCATCGACCGCGGCGAAGCCGTGCATACGCTGGAAGCCGCCAAGGCGATCCTCGCCGCGCAGGTCGCCGCCGTCCCGGCTGCCGTCGAAGACACTTACGATTACGGAGACGACGAAACCTTCGAAGCCGAAGCCGAGTTCGAGGGGGACGACGAGGAGAACGCCGAAGCGTCCTCCGCCGAGGATGCTCCCGCCGCCGAGGGCGAAGAAGGCAACCAACGCCGCAAGCGCCGTCGCCGCCGTCGTGGCCGCGGCGGAGAAGCGCGCGATGGCGCGCAGGCGTCCGAGCGCGGCGATGCGCCCGGCATCGTACCGCAGGATGACGCAGTCAGCGAAGCCAGCGACGCAGACGAAGGCGATGACGAGCAGGACGATCAGACCGGCGAAAGCCGTGCGGATCAGAATGCGAACGGCGAGCGCCGTCCGCGCCGCCGTGGGCGTCGTGGTGGTCGCCGTCGTCGTGGCGGTCAGGATGCAGGTGCCGGCGAGAACGATCAGCCGGATGAAGGAATCGTCGCCACGATTTCCGACGACCTCGGCCCTCTTCCCGAAGCAGAATCCGCAGAGGCTGTCGCCGACCTCTCGTCGCCACCGGAAGAGGCGGCGCGCGATCAGCGCCCGGCCGATCACATGCCGCCTGAACCGGCATCTTCCGTGGCAACTCCCGAGCCGGAAGACGCTGCCGAAGCTGCGCCGCGCAAGCGTTCAACGGTCCGCGAGAAGGTAAGCTTCTTCTTCGGTGACGAACCGAAGCAGGAAGCGGCCCCCACTCCAGTCGAAACTGAATCGCCGGTGTCGAGCGATCCAGCGTCTGCGGCTCCCGAAGCCACGTCAGAGCCGGCGGCCCCTCGCCGCATGGGCTGGTGGTCGCGCCGCAGCGAATAA
PROTEIN sequence
Length: 1023
VTRPRAMRWPPNVPFAVKSSKMPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEYGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESENRSSRRRSRHRNSRRRDRGERVQSEIVEGAAPDAEAGISANTIQVGDHDPEHAHDEAHAGHAHDAPHDEHDHVHGEAHDAATAAGEHHEEHPADDAQPVASAEASAHDVAQESAHDEPVAHDDHGHDDHEHDDHHQEALAHDDVHESDDAPHGDDHHADDEHHSDDADGEDDEDGEDAEEEHVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDTTLRSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVAGESGFTEARDFMKMLMPSNVRSVKQYRDGQPLFSRMGVESQLDAMFSPTVTLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGTGHVRSVSSVALQLLRGLEETLMKGPTHNLTVRTRTDVALYVLNHKRGHLRDLENSFKVSLAVIADPTIAGQQAYVIDRGEAVHTLEAAKAILAAQVAAVPAAVEDTYDYGDDETFEAEAEFEGDDEENAEASSAEDAPAAEGEEGNQRRKRRRRRRGRGGEARDGAQASERGDAPGIVPQDDAVSEASDADEGDDEQDDQTGESRADQNANGERRPRRRGRRGGRRRRGGQDAGAGENDQPDEGIVATISDDLGPLPEAESAEAVADLSSPPEEAARDQRPADHMPPEPASSVATPEPEDAAEAAPRKRSTVREKVSFFFGDEPKQEAAPTPVETESPVSSDPASAAPEATSEPAAPRRMGWWSRRSE*