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SCNpilot_expt_1000_bf_scaffold_1189_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1189_curated_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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109..519
DNA (411bp) protein (137aa)
NADH:ubiquinone oxidoreductase n=2 Tax=Bradyrhizobiaceae RepID=F7QNM3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38650.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1189_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

681..1688
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJJ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39705.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1189_curated_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1751..2425)
DNA (675bp) protein (225aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase; K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNM1_9BRAD
SCNpilot_expt_1000_bf_scaffold_1189_curated_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2463..3554)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P7U8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38647.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1189_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3551..3991)
DNA (441bp) protein (147aa)
Two-component response regulator n=2 Tax=Bradyrhizobiaceae RepID=F7QNL9_9BRAD
Two-component response regulator {ECO:0000313|EMBL:EGP07173.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_1189_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3988..5526)
DNA (1539bp) protein (513aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Afipia birgiae RepID=UPI00037108D4
SCNpilot_expt_1000_bf_scaffold_1189_curated_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5690..7048)
DNA (1359bp) protein (453aa)
Biotin carboxylase of acetyl-CoA carboxylase {ECO:0000313|EMBL:EGP07171.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EGP07171.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
acetyl-CoA carboxylase biotin carboxylase subunit; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Biotin carboxylase of acetyl-CoA carboxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNL7_9BRAD
SCNpilot_expt_1000_bf_scaffold_1189_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7149..7664)
DNA (516bp) protein (172aa)
Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNL6_9BRAD
Biotin carboxyl carrier protein of acetyl-CoA carboxylase {ECO:0000313|EMBL:EGP07170.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_1189_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7701..8156)
DNA (456bp) protein (152aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
3-dehydroquinate dehydratase; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAT0_9BRAD
SCNpilot_expt_1000_bf_scaffold_1189_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8399..9163)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMY2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39713.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1189_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9197..10705)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG43_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39714.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase M48, Ste24p
SCNpilot_expt_1000_bf_scaffold_1189_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10796..11989
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJL0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39715.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
class I and II aminotransferase
SCNpilot_expt_1000_bf_scaffold_1189_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12059..15127)
DNA (3069bp) protein (1023aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Rne/Rng family ribonuclease; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDT5_9BRAD
SCNpilot_expt_1000_bf_scaffold_1189_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15763..17061
DNA (1299bp) protein (433aa)
putative N-acetylmuramoyl-L-alanine amidase precursor; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAT5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39717.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1189_curated_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17258..18757
DNA (1500bp) protein (500aa)
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:EGP07437.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EGP07437.1};; EC=3.4.-.- {ECO:0000313|EMBL:EGP07437.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
penicillin-binding protein 1A; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Multimodular transpeptidase-transglycosylase n=2 Tax=Bradyrhizobiaceae RepID=F7QN18_9BRAD
SCNpilot_expt_1000_bf_scaffold_1189_curated_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18750..19265
DNA (516bp) protein (172aa)
penicillin-binding protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Multimodular transpeptidase-transglycosylase n=2 Tax=Bradyrhizobiaceae RepID=F7QN18_9BRAD
1A family penicillin-binding protein {ECO:0000313|EMBL:EKS40092.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Displaying 16 items

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