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SCNpilot_expt_1000_bf_scaffold_1413_curated_6

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(4120..4887)

Top 3 Functional Annotations

Value Algorithm Source
putative RNA pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] similarity KEGG
DB: KEGG
  • Identity: 84.7
  • Coverage: 248.0
  • Bit_score: 444
  • Evalue 2.70e-122
Pseudouridine synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2A5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 255.0
  • Bit_score: 504
  • Evalue 6.90e-140
RluA family pseudouridine synthase {ECO:0000313|EMBL:EKS33815.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 255.0
  • Bit_score: 504
  • Evalue 9.70e-140

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Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 768
ATGGATACGCCGCAACCGACACCCGAGGAAATGCAGGCCCGCGTGCTTCATCGCGACGGGCTGATGCTGGTGATCGACAAGCCGGCCGGCATCGCCGTGCACAAGGGGCCGAAAGGCGGACCCAATCTCGAAGCCTCGTTCGACGCGCTGCGCTACGGCCTGCCGCGCCCGCCGGTGCTCGCTCACCGGCTCGACCGCGACACCTCCGGCTGTCTGGTGCTGGGACGGCATCGCAAGGCCACCGCCTCGCTCGGCCTGCTGTTCAAGCACGGCAAGATCGACAAGACCTATTGGGCCGTGGTCGAAGGCGGACCCGAAGCCGATCAGGGCACCATCGATATTCCGCTGGGACGTTTGGACGCAGAGCGCGGCTGGTGGCAGAAGCCGGACCCGAACGGCCTGCCCTCGAAAACCGAGTGGAAGGTTCTCGGGCGCGGCACGGATGCGAACGGCGCGAAGCTGACATGGCTCGCGATGGAACCGATCACAGGCCGCACCCATCAACTGCGCGTGCATAGTTCGGCGAGCGGCTGGCCGATCGTCGGCGACAACATCTACGGCAACGGCCCGCGCTTCGGCGAGCCGTCACTGCATCTGCATGCGCGCGAGATCGTGATTCCCTTGTCGCGAAACAAACCGCCGGTGCGTGTGGTCGCGCCGGCGCCGGCGCATCTGCATGAGCGATTGAAAGCGTGCGGATGGAATGGCGAAGACACTGAAGCTGCCCCCGTCATTGCGAGCGAAGCGACGCAATCCACTCTTGGGTAA
PROTEIN sequence
Length: 256
MDTPQPTPEEMQARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKIDKTYWAVVEGGPEADQGTIDIPLGRLDAERGWWQKPDPNGLPSKTEWKVLGRGTDANGAKLTWLAMEPITGRTHQLRVHSSASGWPIVGDNIYGNGPRFGEPSLHLHAREIVIPLSRNKPPVRVVAPAPAHLHERLKACGWNGEDTEAAPVIASEATQSTLG*