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SCNpilot_expt_1000_bf_scaffold_2648_curated_18

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: 18215..18739

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NN76_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 71.3
  • Coverage: 174.0
  • Bit_score: 249
  • Evalue 2.70e-63
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS31772.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 174.0
  • Bit_score: 249
  • Evalue 3.90e-63
SigD; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.0
  • Coverage: 174.0
  • Bit_score: 232
  • Evalue 1.10e-58

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Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 525
ATGCTCGCGAGCCTGGACGGCGACGCAGCCGCGCATCGCGTATTGCTCGGTCGGCTGAGCGGTCACCTGCGTGCGTACTATAGAAGCAAGCTCGTCCGGGCCGGACGTTCGGCAAGCGAAGCTGAGGATCTCGTTCAGGAGGCGGTTCTGGCGATACACCTCAAGCGGCATACCTACGATCCCGACGAACCGTTGACGCCGTGGGTACAAGCCATCGCGCGCTTCAAGCTCATCGACTACCTGCGGCGGACCAGGAAATCCGTCAAGAACCTACCGATCGACGCCGCGGAGAACGTGACGGCCGGCGACGATCCGTCGGCGGTCGAGAGCAGCCTGGATCTGGGGCAGATCTTGGGACTGCTGCCCGAAAAGATGCGCTGCTCGATCGTCGCGGTGAAACTCGACGGCCGCAGCGTCTCCGAGGCCGCCGAACGGTGCGGCATCTCGGAGCCGTTGGTGAAGATCAATATCCACCGCGGCCTGAAGCGCCTGGCCGCCCTGATCGCGAAGGAGACGCGCGCGTGA
PROTEIN sequence
Length: 175
MLASLDGDAAAHRVLLGRLSGHLRAYYRSKLVRAGRSASEAEDLVQEAVLAIHLKRHTYDPDEPLTPWVQAIARFKLIDYLRRTRKSVKNLPIDAAENVTAGDDPSAVESSLDLGQILGLLPEKMRCSIVAVKLDGRSVSEAAERCGISEPLVKINIHRGLKRLAALIAKETRA*