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SCNpilot_expt_1000_bf_scaffold_2648_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2648_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1101
DNA (1101bp) protein (367aa)
Copper tolerance protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K5_RHOPS
copper tolerance protein
Copper tolerance protein {ECO:0000313|EMBL:ABE41484.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1101..2483
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P009_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31758.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_2648_curated_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2513..3001
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEV5_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52675.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
copper-binding protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3020..3325
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K2_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41487.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3393..4352
DNA (960bp) protein (320aa)
Putative methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX8_OLICM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AEI08222.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..6217
DNA (1869bp) protein (623aa)
Multicopper oxidase n=2 Tax=Oligotropha carboxidovorans RepID=B6JJX9_OLICO
multicopper oxidase
Multicopper oxidase {ECO:0000313|EMBL:AEI05241.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6276..6641
DNA (366bp) protein (122aa)
Copper resistance protein CopC n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K1_RHOPS
copper resistance protein CopC; K07156
Copper resistance protein CopC {ECO:0000313|EMBL:ABE41488.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6641..7573
DNA (933bp) protein (311aa)
Copper resistance D n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K0_RHOPS
copper resistance D; K07245 putative copper resistance protein D
Copper resistance D {ECO:0000313|EMBL:ABE41489.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7624..8790
DNA (1167bp) protein (389aa)
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCJ9_9BRAD
6-pyruvoyl tetrahydrobiopterin synthase {ECO:0000313|EMBL:ERF82196.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8787..9398
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FDF8EA
Cytochrome C {ECO:0000313|EMBL:KIZ44809.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
cytochrome c family protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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9449..10723
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EE5578
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
SCNpilot_expt_1000_bf_scaffold_2648_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10791..11270
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003750ECC
Uncharacterized protein {ECO:0000313|EMBL:EKS31765.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11372..11728
DNA (357bp) protein (119aa)
Antibiotic transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBQ1_9BRAD
Antibiotic transport system permease {ECO:0000313|EMBL:ERF82203.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11829..12233
DNA (405bp) protein (135aa)
Haloacetate dehalogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1II74_9BRAD
Haloacetate dehalogenase {ECO:0000313|EMBL:ERF82204.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12230..13474
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEW9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF82205.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13628..14890
DNA (1263bp) protein (421aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCK9_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ERF82206.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Efflux transporter, RND family, MFP subunit
SCNpilot_expt_1000_bf_scaffold_2648_curated_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14887..18078
DNA (3192bp) protein (1064aa)
CzcA family heavy metal efflux pump n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXH7_9BRAD
CzcA family heavy metal efflux pump {ECO:0000313|EMBL:ERF82207.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
CzcA family heavy metal efflux protein; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
SCNpilot_expt_1000_bf_scaffold_2648_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18215..18739
DNA (525bp) protein (175aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NN76_9BRAD
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS31772.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SigD; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2648_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18736..19377
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJM6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38593.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_20
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19446..19691
DNA (246bp) protein (82aa)
Polyvinyl alcohol dehydrogenase (Cytochrome) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCL4_9BRAD
Polyvinyl alcohol dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ERF82211.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_21
unknown

Not on your lists

19669..20007
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2648_curated_22
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20315..21091
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4R916_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ87938.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_23
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21371..22129)
DNA (759bp) protein (253aa)
Putative Zn peptidase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3IUU8_RHOS4
Uncharacterized protein {ECO:0000313|EMBL:GAM98936.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2648_curated_24
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22140..22544)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Rhodobacter sphaeroides RepID=U5NRT4_RHOS4
Uncharacterized protein {ECO:0000313|EMBL:GAM98935.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_25
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22541..23149)
DNA (609bp) protein (203aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3IUU7_RHOS4
hypothetical protein
Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence {ECO:0000313|EMBL:ABA81687.2}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_26
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23338..24489
DNA (1152bp) protein (384aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=C5B4D8_METEA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHP92765.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_27
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24494..26803
DNA (2310bp) protein (770aa)
Putative UBA/THIF-type NAD/FAD binding fold protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JG02_HYPSM
UBA/THIF-type NAD/FAD binding fold protein
Putative UBA/THIF-type NAD/FAD binding fold protein {ECO:0000313|EMBL:CCB65518.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_28
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26800..27606
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUA9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04132.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_2648_curated_29
unknown

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comp(27480..28283)
DNA (804bp) protein (268aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2648_curated_30
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28449..29141
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036D4D3F
Uncharacterized protein {ECO:0000313|EMBL:KFG69741.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
Displaying items 1-30 of 37 in total

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