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SCNpilot_expt_1000_bf_scaffold_19700_curated_1

Organism: scnpilot_dereplicated_Alphaproteobacteria_8

near complete RP 41 / 55 BSCG 41 / 51 MC: 2 ASCG 7 / 38
Location: 3..431

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=alpha proteobacterium SCGC AAA536-K22 RepID=UPI0003B67183 similarity UNIREF
DB: UNIREF100
  • Identity: 39.4
  • Coverage: 132.0
  • Bit_score: 108
  • Evalue 4.70e-21
Membrane protein {ECO:0000313|EMBL:AIW16628.1}; TaxID=1051646 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio tubiashii ATCC 19109.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.3
  • Coverage: 139.0
  • Bit_score: 106
  • Evalue 2.50e-20
Putative transporter, DME family; K15270 S-adenosylmethionine uptake transporter similarity KEGG
DB: KEGG
  • Identity: 39.9
  • Coverage: 143.0
  • Bit_score: 103
  • Evalue 4.80e-20

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Taxonomy

Vibrio tubiashii → Vibrio → Vibrionales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 429
TCGCTCGCGGCCGTTGCTGCCGTCGGCTCGAGTATCCTCTGGGCCATGTCGCTGCTCATTGCCAAGGATCTGACGCGCTTCGACAGCCCGATCACGATCTCCTTCTATCAGCCGCTGATGATCGCGCCGATCGCCGGGCTGGCGGCGATCCCGGTCTGGGTCATGCCGAGCGGCGGCGCGTGGCTTGCGCTCGTCGGCATGGGCGCCGTCGCTGCCCTCGGCAACTTCTGCTACGTGCAGGCGCTCAAGATGGTCGATGCCAGCCTGCTCATGCCGGCGGACTACGTGCGCCTGCTCTGGATGGTCACCTGGGGCTACATCTTCTTCAGCGAGGTGCCCGGCTGGTCGACGTGGCTCGGAGCCGCGCTGATCGTGGGATCGACGCTCTTCGTAACGTGGCGCGAGGCGAAACGCCGCGCGGAAACGTGA
PROTEIN sequence
Length: 143
SLAAVAAVGSSILWAMSLLIAKDLTRFDSPITISFYQPLMIAPIAGLAAIPVWVMPSGGAWLALVGMGAVAALGNFCYVQALKMVDASLLMPADYVRLLWMVTWGYIFFSEVPGWSTWLGAALIVGSTLFVTWREAKRRAET*