ggKbase home page

SCNpilot_cont_300_bf_scaffold_3224_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3224_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1070
-----------------
DNA (1068bp)
protein (356aa)
Aminotransferase class-V family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW50_BREDI
Aminotransferase class-V family protein {ECO:0000313|EMBL:EGF96829.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
class V aminotransferase
SCNpilot_cont_300_bf_scaffold_3224_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1075..1872)
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein (Fragment) n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRV9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30739.1}; Flags: Fragment;; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1919..2392)
-----------------
DNA (474bp)
protein (158aa)
Acetyltransferase GNAT family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW51_BREDI
Acetyltransferase GNAT family protein {ECO:0000313|EMBL:EGF96830.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
acetyltransferase
SCNpilot_cont_300_bf_scaffold_3224_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2466..3353)
-----------------
DNA (888bp)
protein (296aa)
Alpha/beta hydrolase fold family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW52_BREDI
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:EGF96831.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alpha/beta hydrolase
SCNpilot_cont_300_bf_scaffold_3224_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3359..3856)
-----------------
DNA (498bp)
protein (166aa)
Ferric uptake regulator family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW53_BREDI
Ferric uptake regulator family protein {ECO:0000313|EMBL:EGF96832.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Fur family ferric uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_cont_300_bf_scaffold_3224_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4022..4813
-----------------
DNA (792bp)
protein (264aa)
SapC family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW54_BREDI
SapC family protein {ECO:0000313|EMBL:EGF96833.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SapC family protein
SCNpilot_cont_300_bf_scaffold_3224_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5054..5461)
-----------------
DNA (408bp)
protein (136aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW55_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96834.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3224_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5479..6000)
-----------------
DNA (522bp)
protein (174aa)
Putative NADP-dependent oxidoreductase yncB n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW56_BREDI
Putative NADP-dependent oxidoreductase yncB {ECO:0000313|EMBL:EGF96835.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alcohol dehydrogenase zinc-binding domain-containing protein; K07119
SCNpilot_cont_300_bf_scaffold_3224_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6809..7114
-----------------
DNA (306bp)
protein (102aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW57_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96836.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7185..7976)
-----------------
DNA (792bp)
protein (264aa)
Response regulator n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW58_BREDI
Response regulator {ECO:0000313|EMBL:EGF96837.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_3224_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8176..8382
-----------------
DNA (207bp)
protein (69aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW59_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96838.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3224_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8379..8981
-----------------
DNA (603bp)
protein (201aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW60_BREDI
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EGF96839.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_3224_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8984..10744
-----------------
DNA (1761bp)
protein (587aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW61_BREDI
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EGF96840.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_3224_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10807..10944
-----------------
DNA (138bp)
protein (46aa)
Entericidin EcnA/B family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW62_BREDI
Entericidin EcnA/B family protein {ECO:0000313|EMBL:EGF96841.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
entericidin B-like protein
SCNpilot_cont_300_bf_scaffold_3224_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11083..12201
-----------------
DNA (1119bp)
protein (373aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW63_BREDI
SCNpilot_cont_300_bf_scaffold_3224_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12276..12596
-----------------
DNA (321bp)
protein (107aa)
TonB protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW64_BREDI
TonB protein {ECO:0000313|EMBL:EGF96843.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12676..13326)
-----------------
DNA (651bp)
protein (217aa)
Putative phosphatase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2ABE4_RHIET
Putative phosphatase protein {ECO:0000313|EMBL:EGE58313.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13473..13607
-----------------
DNA (135bp)
protein (45aa)
GTPase Obg n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW65_BREDI
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
GTP-binding protein Obg/CgtA; K03979 GTP-binding protein
SCNpilot_cont_300_bf_scaffold_3224_curated_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13791..15083
-----------------
DNA (1293bp)
protein (431aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW66_BREDI
DNA polymerase I family protein {ECO:0000313|EMBL:EGF96845.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15089..16660
-----------------
DNA (1572bp)
protein (524aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW66_BREDI
DNA polymerase I family protein {ECO:0000313|EMBL:EGF96845.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_3224_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16690..16998
-----------------
DNA (309bp)
protein (103aa)
Acetyltransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW67_BREDI
Acetyltransferase {ECO:0000313|EMBL:EGF96846.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
acetyltransferase; K06975
SCNpilot_cont_300_bf_scaffold_3224_curated_22
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17038..18261
-----------------
DNA (1224bp)
protein (408aa)
Flavoprotein family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QST1_BREDI
Flavoprotein family protein {ECO:0000313|EMBL:EKY30755.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein; K07007
SCNpilot_cont_300_bf_scaffold_3224_curated_23
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18408..18758
-----------------
DNA (351bp)
protein (117aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI0003702C31
Uncharacterized protein {ECO:0000313|EMBL:KIC60847.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein; K09981 hypothetical protein
SCNpilot_cont_300_bf_scaffold_3224_curated_24
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18772..20499)
-----------------
DNA (1728bp)
protein (576aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QS62_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30756.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3224_curated_25
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20716..21423
-----------------
DNA (708bp)
protein (236aa)
Transcriptional regulatory protein chvI n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QW69_BREDI
Transcriptional regulatory protein chvI {ECO:0000313|EMBL:EGF96848.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
SCNpilot_cont_300_bf_scaffold_3224_curated_26
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21392..21502
-----------------
DNA (111bp)
protein (37aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRV7_BREDI
Displaying 26 items

View Taxonomy