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SCNpilot_bf_inoc_scaffold_61_curated_180

Organism: scnpilot_dereplicated_Chryseobacterium_1

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 13 / 38 MC: 1
Location: comp(202975..203778)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 266.0
  • Bit_score: 448
  • Evalue 6.60e-123
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 83.7
  • Coverage: 270.0
  • Bit_score: 447
  • Evalue 2.50e-123
Transcription-repair-coupling factor n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X2W6_FLAB3 similarity UNIREF
DB: UNIREF100
  • Identity: 83.7
  • Coverage: 270.0
  • Bit_score: 447
  • Evalue 8.10e-123

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Taxonomy

Epilithonimonas sp. FH1 → Epilithonimonas → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 804
ATGGCAGATTTGCACCAGATGCGCGGAAGGGTGGGGCGAAGTAAACGGAAGGCGTTCTGTTACTTGATCACGCCGCCGTTTGATATGATGACAGCCGATGCACGTAAAAGGTTAGAAGCCATCGAACAGTTTTCGGATCTGGGAAGTGGTTTCCAGATTGCGATGAAAGACCTAGAAATTCGTGGAGCAGGCGATTTGCTGGGTGGTGAGCAAAGTGGGTTCATTAATGAAATGGGCTTCGATACTTACCAGAAAATTATGCAGGAAGCATTGGAAGAACTTCAAAATGAGGAAGACTTTGATGAGCTTTTTAGCAATGAAGAAGATCGTAAGAAGCTTTTCAAATCGAATAAGGAAGTGAACATTGATACCGATCTGGAGCTGATGTTGCCAGATTCGTATGTGACGAATATTGAAGAGCGTTTATCGCTTTACCAGAAGTTGGCAGAAATTGAAGATCAACCGGCATTGAATCATTTTAAAAATGAACTTGAGGATCGTTTCGGAGCATTGCCGCAAGAAGCGACAAATCTTTTGAAATCGGTGGAGTTAAAATGGATTGCCGCTTCTATCGGCTTTGAAAAACTGGTGGTGAAGAATGGCGTTTTTCTGGGGTATTTCCCATCCAATCCGCAGGATAAATTTTACCAAAGCGATCGGTTTCGAGCTATTATTGCCTACCTAACCCAACACCCGACGGAAGCCACGCTGAAAGAAAAAAACAACCAACTGATGATGCGCAAAGATAATGTGAAGAGTGTGGATGAGGTCAATGGATTGCTTTCAAGAATCTTGAACCCTTAA
PROTEIN sequence
Length: 268
MADLHQMRGRVGRSKRKAFCYLITPPFDMMTADARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNEEDFDELFSNEEDRKKLFKSNKEVNIDTDLELMLPDSYVTNIEERLSLYQKLAEIEDQPALNHFKNELEDRFGALPQEATNLLKSVELKWIAASIGFEKLVVKNGVFLGYFPSNPQDKFYQSDRFRAIIAYLTQHPTEATLKEKNNQLMMRKDNVKSVDEVNGLLSRILNP*