ggKbase home page

scnpilot_p_inoc_scaffold_4033_curated_4

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: comp(1929..2516)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 195.0
  • Bit_score: 356
  • Evalue 1.80e-95
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 195.0
  • Bit_score: 356
  • Evalue 2.50e-95
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 60.3
  • Coverage: 194.0
  • Bit_score: 237
  • Evalue 2.90e-60

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 588
ATGTCCGCGGCCCTGGTCGCGTCGGCCCTGCCGGCCGATGCCGTTGAACTGGGCCGCGTCCAGGATGCCTGGGGCATCAAGGGCTGGGTCCGCATCCAGCCCCACAGCGCCGACACCGACGCGCTGTTCGCCAGCCAGGACTGGTACCTCCAGCCGCCCGAAGCCTGCTTCGCGCGCGGCTTTTCTGCTTTCAAGGGCTGCGTGGCCGTGCGGGTGGCCGAGCTCAAGGCCCACGCCGACGGCCTGGTGGCCCGGCTCGAGGGCGTCGACGACCGCAACCTGGCGGAGTCGCTCAAGGGCTGCCGCATCAGCCTGCCGCGCAGCGCCTTTCCCGAGCCCGAAGAGGGCGAGTACTACTGGGTCGACCTGATCGGCCTGCGGGTGGTCAACCGCGAGGGCGAGGACCTGGGCGTGGTGCGCGACCTCGTGAGCACGGGACCGACCTCGGTGCTGGTGCTCGAGTACCTCGAGACGGTGGACGGCGAGGAGCGCGCCGCCGAGCGGATGATCCCCTTCGTGGCCGCCTACATCGACGACGTGGACCGCGCCGCTGGGCGCATCACCGCCGACTGGCAAAAAGACTACTGA
PROTEIN sequence
Length: 196
MSAALVASALPADAVELGRVQDAWGIKGWVRIQPHSADTDALFASQDWYLQPPEACFARGFSAFKGCVAVRVAELKAHADGLVARLEGVDDRNLAESLKGCRISLPRSAFPEPEEGEYYWVDLIGLRVVNREGEDLGVVRDLVSTGPTSVLVLEYLETVDGEERAAERMIPFVAAYIDDVDRAAGRITADWQKDY*