ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_1000_bf_scaffold_2544_curated_23

Organism: scnpilot_dereplicated_Mesorhizobium_2

near complete RP 45 / 55 MC: 1 BSCG 45 / 51 ASCG 11 / 38 MC: 2
Location: 18380..22162

Top 3 Functional Annotations

Value Algorithm Source
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:CDX11965.1}; EC=1.17.4.1 {ECO:0000313|EMBL:CDX11965.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.2
  • Coverage: 999.99
  • Bit_score: 2243
  • Evalue 0.0
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] similarity KEGG
DB: KEGG
  • Identity: 86.2
  • Coverage: 999.99
  • Bit_score: 2210
  • Evalue 0.0
Ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FNS5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.5
  • Coverage: 999.99
  • Bit_score: 2237
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. ORS3324 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3783
ATGCGCATTGAACGGCACTTCACCAAGGCGGGCCAATCTCCCTATGCGGAGATCGAATTCCGCAAGGCGCTCTCCGAGATCAAGAATCCGGATGGCTCGGTGGTGTTCCGCCTCGACGACATCGACGTGCCCACCCAGTTCAGCCAGGTCGCCGCCGACATCCTCGCGCAGAAGTATTTCCGCAAGGCCGGCGTTCCCGCGCGCCTGAAGAAAGTCGAAGAAAACGACGTTCCGTCCTTCCTGTGGCGCTCCGTGCCCGACGAGGCCGAGCTTGCCAAGCTGCCGGAGGCCGCGCGCTTCGGTTCCGAGCGCGATGCGCGCCAGGTCTTCGACCGCCTCGCCGGCACATGGGCGTACTGGGGCTGGAAGGGCGGCTATTTCAAGTCCGAGGAAGATGCCCGCGCCTTCCGCGACGAGCTTGCCTATATGCTGGCCACCCAGCGCGTCGCGCCGAACTCGCCGCAGTGGTTCAACACCGGCCTGCACTGGGCCTATGGCATCGACGGCCCCGGCCAGGGCCATTTCTACGTCGACCCCTTCACCGGTAAGCTGACCAAATCCAAGTCGGCCTATGAGCATCCGCAGCCGCATGCCTGCTTCATCCAGGGCGTGCAGGACGATCTCGTCAACGAAGGCGGCATCATGGACCTGTGGGTGCGCGAGGCGCGCCTGTTCAAATACGGTTCCGGCACCGGCTCCAACTTCTCCATGCTGCGCGGCGAAGGCGAGAAGCTTTCCGGCGGCGGCCGCTCGTCCGGCCTGATGTCCTTCCTCAAGATCGGCGACCGTGCTGCCGGCGCCATCAAGTCGGGCGGCACCACGCGCCGCGCTGCCAAGATGGTCATCGTCGATGCCGACCACCCCGATATCGAGAGCTTCATCGACTGGAAGGTGAAGGAAGAGCAGAAGGTGGCGGCACTTGTCACCGGCTCCAAGGTCGTGCGCAAGCACCTCGACGCCATCATGAAGGCCTGCGTCAACTGCGAGGGTCAGGACGACGACTGCTTCGATCCGTCGATCAACACCGCGCTGAAGCGCGAGATCAAGGCGGCCAAGAAGGACGCCGTGCCGGAAAACTACGTCCAGCGCGTCATCCAGTTCGCGCGCCAGGGCTACACCTCGATCGAGTTCAAGACCTACGACACCGACTGGGATTCGGAAGCCTACCTCACCGTTTCCGGCCAGAACTCGAACAATTCCGTCTCGCTCAAGGACGACTTCCTGCGCGCCGTCGAGCAGGATGGCGACTGGAACCTGACCGCCCGCAAGGACGGCCGCGTCATGAAGACCATGAAGGCGCGCGACCTCTGGGAAAAGATCGGCTACGCCGCATGGGCGTCCGCTGATCCGGGCCTGCACTTCAACACCACCATGAACGACTGGCACACCTCGCCGGCAGCCGGCCCGATCCGCGGCTCCAACCCGTGCTCGGAGTACATGTTCCTCGACGACACGGCCTGCAACCTCGCCTCGATCAATCTCCTGCCCTACCGCAACGCCGACGGCACCATCGACATCGCCGCCTACGAGCATTCGGTGCGGCTGTGGACCATCGTGCTCGAAGTCTCGGTGATGATGGCGCAGTTCCCGTCGAAGGAGATCGCCAAGCAGTCCTACGAGTACCGCACGCTCGGCCTCGGCTACGCCAATATCGGCGGCCTCCTGATGACCTCCGGCATCCCCTATGACTCGGACGAGGGCCGCGCCATCTGCGCCGCGCTCACCGCCATCATGACCGGCGTTTCCTACGCCACCTCGGCGGAAATGGCCTCCGAGCTCGGCGCGTTCCCGGACTACGACCGCAACGCCGTGAACATGCTGCGCGTCATGCGCAACCACCGCCGCGCCGCCTATGGCGAGAAGGACGGCTACGAGAAGCTGGCGGTCAATCCGGTTCCGCTCAATGCCGACCACATCTGGCAGAAGGATCTCGTCACCCACGCCAAGGCCGCATGGGACCGCGCCATCGAGCTTGGCGAGGAGCATGGCTACCGCAACGCGCAGGCCACCGTCATCGCGCCGACCGGCACCATCGGCCTGGTCATGGATTGCGACACCACCGGCATCGAGCCCGACTTCGCGCTGGTGAAATTCAAGAAGCTCGCCGGCGGCGGCTACTTCAAGATCATCAACGCCGCGGTGCCGGAAGCGCTGCGTTCGCTCGGCTATTCCGAGAGCCAGATCGCCGAGATCGACGCCTATGCCGTCGGCCATGGCAACCTGAATCAAGCGCCGGGCGTAAACCCTTCAACGCTCAAGACAAAAGGCTTCACCGACGAGAAGATCGCGGCCCTTAACGCCGCGCTGAAGTCGGCCTTCGACATCAAGTTCGTGTTCAACCAGTGGACGCTCGGCGCCGACTGGGTGAAGGAGACCTTCGGCTTCACCGACGAGCAGCTTTCCGACTTCTCATTCGAGATGCTGCCGGCGCTGGGCTTCACCCGCAAGGAAATCGAGGCCGCCAACATCCATGTCTGCGGTGCGATGACGTTGGAAGGCGCACCCTTCCTCAAGGTCGAGCACTATCCGGTGTTCGATTGCGCCAACCCCTGCGGCAAGATCGGCAAGCGCTACCTCTCGGTCGAGTCGCACATCCGCATGATGGCGGCGGCGCAGCCCTTCATCTCGGGTGCCATTTCCAAGACCATCAACATGCCGAACGAGGCGACCGTCGAGGACGCCAAGAACGCCTACATGCTGTCTTGGAAGCTGGCGCTCAAGGCCAACGCGCTCTACCGCGACGGCTCCAAGCTGTCGCAGCCGCTCAACGCCTCGCTCATCGCCGATGACGAGGAGGACGAGGACGATGCCGTCGAGGCGCTGATCGCGTCGCCCGCCGCCGCCAAGGCGGTGCAGGTCACCGAGAAGATCGTCGAGCGCATCGTCGAAAAAGTGGTGCGCGACCGCGAGAAGCTGCCGAACCGCCGCAAGGGCTACACCCAGAAAGCCATCGTCGGCGGCCACAAGGTCTACCTGCGCACCGGCGAATTCGACGACGGGCGGCTCGGCGAAATCTTCATCGACATGCACAAGGAAGGCGCCGCCTTCCGCGCCATGATGAACAACTTCGCCATCGCCATTTCGCTCGGCCTGCAATACGGCGTGCCGCTGGAGGAATATGTCGAGGCGTTCACGTTTGTAAAATTCGAGCCGGCCGGCATGGTGCAGGGCAACGACGCCATCAAGAGCGCCACCTCGATCATCGACTACGTGTTCCGTGAGCTCGCCATCAGCTATCTCGGCCGCAACGACCTCGCCCATGTCGATACCGACTTCTCCAACACCTCGCTTGGCAAGGGCATCACCGAGGGCAAGGCATTCGCCTTCTCCAAGGGCCTGACGCGCGGCGTCTCGCCGGTCAAGCTGGTTTCGGCAGCCAGCGAGCCGAAGGGCTTTGCCGGTGGTTCGGGCTCCGGCACGGGCGACCGCCCTGCCCGCGCCGCGCCCACCGCCTTTGCCGGCAACGTGTTGTCGCTCGCCACCGCAACGGCAACCGCACTGAAGGCCGAGGTGTCAAGCGACGAGGCTGTCGCCTTCAAGCGCGACTATGAGGAGCGCGCCCGCGAGGAAGCCAGCGAGGCTGTCGAAACCGAGGCGCTGTTCACCGACGCCGCCGCCCAGGAAGCGGCCGACGCCAAGAAGGTCGCCGCAGACCGCCGCGCCAAGTCGCTGTTGCAAGGCTACACCGGCAACAGTTGCTCGGAGTGCCAGAACTTCACCATGGTGCGCAACGGCACCTGCGAGAAGTGCGACACGTGCGGCGCGACCAGCGGGTGCAGCTGA
PROTEIN sequence
Length: 1261
MRIERHFTKAGQSPYAEIEFRKALSEIKNPDGSVVFRLDDIDVPTQFSQVAADILAQKYFRKAGVPARLKKVEENDVPSFLWRSVPDEAELAKLPEAARFGSERDARQVFDRLAGTWAYWGWKGGYFKSEEDARAFRDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPFTGKLTKSKSAYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIESFIDWKVKEEQKVAALVTGSKVVRKHLDAIMKACVNCEGQDDDCFDPSINTALKREIKAAKKDAVPENYVQRVIQFARQGYTSIEFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVEQDGDWNLTARKDGRVMKTMKARDLWEKIGYAAWASADPGLHFNTTMNDWHTSPAAGPIRGSNPCSEYMFLDDTACNLASINLLPYRNADGTIDIAAYEHSVRLWTIVLEVSVMMAQFPSKEIAKQSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGVSYATSAEMASELGAFPDYDRNAVNMLRVMRNHRRAAYGEKDGYEKLAVNPVPLNADHIWQKDLVTHAKAAWDRAIELGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINAAVPEALRSLGYSESQIAEIDAYAVGHGNLNQAPGVNPSTLKTKGFTDEKIAALNAALKSAFDIKFVFNQWTLGADWVKETFGFTDEQLSDFSFEMLPALGFTRKEIEAANIHVCGAMTLEGAPFLKVEHYPVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDAKNAYMLSWKLALKANALYRDGSKLSQPLNASLIADDEEDEDDAVEALIASPAAAKAVQVTEKIVERIVEKVVRDREKLPNRRKGYTQKAIVGGHKVYLRTGEFDDGRLGEIFIDMHKEGAAFRAMMNNFAIAISLGLQYGVPLEEYVEAFTFVKFEPAGMVQGNDAIKSATSIIDYVFRELAISYLGRNDLAHVDTDFSNTSLGKGITEGKAFAFSKGLTRGVSPVKLVSAASEPKGFAGGSGSGTGDRPARAAPTAFAGNVLSLATATATALKAEVSSDEAVAFKRDYEERAREEASEAVETEALFTDAAAQEAADAKKVAADRRAKSLLQGYTGNSCSECQNFTMVRNGTCEKCDTCGATSGCS*