ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2544_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2544_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

488..718
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CDG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIZ47578.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

786..986
DNA (201bp) protein (67aa)
UPI0003CFFE6E related cluster n=1 Tax=unknown RepID=UPI0003CFFE6E
Uncharacterized protein {ECO:0000313|EMBL:EZQ15319.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_2544_curated_3
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1061..1483)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZQ16_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:KIC09679.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1685..2092)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BC10F
Uncharacterized protein {ECO:0000313|EMBL:ESZ20710.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_5
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2274..2672)
DNA (399bp) protein (133aa)
NADH-ubiquinone oxidoreductase {ECO:0000313|EMBL:ESZ20711.1}; EC=1.6.99.3 {ECO:0000313|EMBL:ESZ20711.1};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
NADH:ubiquinone oxidoreductase 17.2 kD subunit; K00356 NADH dehydrogenase [EC:1.6.99.3]
UPI0003D040FE related cluster n=1 Tax=unknown RepID=UPI0003D040FE
SCNpilot_expt_1000_bf_scaffold_2544_curated_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2839..3669
DNA (831bp) protein (277aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y615_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2544_curated_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3672..4520
DNA (849bp) protein (283aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Pantothenate synthetase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F458_9RHIZ
pantoate--beta-alanine ligase
SCNpilot_expt_1000_bf_scaffold_2544_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4524..5012)
DNA (489bp) protein (163aa)
GCN5-like N-acetyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HW77_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EHK54920.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2544_curated_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5012..6511)
DNA (1500bp) protein (500aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FB75_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2544_curated_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6666..7721
DNA (1056bp) protein (352aa)
fbpA1; ABC transporter permease; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] rbh
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000377041F
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZQ16363.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_11
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7838..8860
DNA (1023bp) protein (341aa)
iron ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI000361FD8C
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:EZQ16362.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
putative Fe3+ ABC transporter, substrate-binding component
SCNpilot_expt_1000_bf_scaffold_2544_curated_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8904..10577
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003720267
Iron ABC transporter permease {ECO:0000313|EMBL:EXL09605.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
fbpA3; ABC transporter membrane spanning protein; K02011 iron(III) transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2544_curated_13
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10609..11040)
DNA (432bp) protein (144aa)
UPI0003CE1F9F related cluster n=1 Tax=unknown RepID=UPI0003CE1F9F
Inosine-5-monophosphate dehydrogenase {ECO:0000313|EMBL:ESZ20717.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
putative signal-transduction protein containing cAMP-binding and CBS domains
SCNpilot_expt_1000_bf_scaffold_2544_curated_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11203..11868)
DNA (666bp) protein (222aa)
Peptidase S54 n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FS69_9RHIZ
Peptidase S54 {ECO:0000313|EMBL:EXL09027.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Rhomboid family protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_15
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12312..12950
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQP4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV06652.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_16
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13066..13683
DNA (618bp) protein (206aa)
Type IV pilus assembly PilZ n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y630_9RHIZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EHH12798.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
type IV pilus assembly PilZ
SCNpilot_expt_1000_bf_scaffold_2544_curated_17
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13960..14565
DNA (606bp) protein (202aa)
UPI0003CEC41F related cluster n=1 Tax=unknown RepID=UPI0003CEC41F
Uncharacterized protein {ECO:0000313|EMBL:ESZ51814.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14688..15215)
DNA (528bp) protein (176aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KMI7_MESAW
Acetyltransferase {ECO:0000313|EMBL:EZQ15331.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2544_curated_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..15581)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRF3_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB46668.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15690..16445
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y636_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH12804.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2544_curated_21
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16457..16660)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKF5_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ20729.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16803..17645)
DNA (843bp) protein (281aa)
Serine acetyltransferase {ECO:0000313|EMBL:CDX58266.1}; EC=2.3.1.30 {ECO:0000313|EMBL:CDX58266.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Serine O-acetyltransferase n=3 Tax=Mesorhizobium RepID=V7EUK9_9RHIZ
serine O-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2544_curated_23
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18380..22162
DNA (3783bp) protein (1261aa)
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:CDX11965.1}; EC=1.17.4.1 {ECO:0000313|EMBL:CDX11965.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FNS5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2544_curated_24
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22206..22796
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A96D8
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHK74259.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22928..23239)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAD0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV13390.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Hypothetical Protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_26
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23632..23814
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003668B66
Uncharacterized protein {ECO:0000313|EMBL:KJE33933.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_27
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24023..24325
DNA (303bp) protein (101aa)
UPI0003CF725D related cluster n=1 Tax=unknown RepID=UPI0003CF725D
Uncharacterized protein {ECO:0000313|EMBL:ESY76388.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2544_curated_28
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24996..26207)
DNA (1212bp) protein (404aa)
Putative metal cation transporter n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MI2_MESSB
putative metal cation transporter
Putative metal cation transporter {ECO:0000313|EMBL:ABG61387.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_29
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26204..27334)
DNA (1131bp) protein (377aa)
Multicopper oxidase, type 3 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MI1_MESSB
multicopper oxidase, type 3
Multicopper oxidase, type 3 {ECO:0000313|EMBL:ABG61388.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2544_curated_30
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27502..28458)
DNA (957bp) protein (319aa)
lysozyme (EC:3.2.1.17)
Glycoside hydrolase family 25 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FB34_9RHIZ
Glycosyl hydrolase {ECO:0000313|EMBL:EXL09039.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Displaying items 1-30 of 39 in total

View Taxonomy