ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4095_curated_1

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(34..975)

Top 3 Functional Annotations

Value Algorithm Source
Peptide ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5J5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 313.0
  • Bit_score: 566
  • Evalue 2.40e-158
Peptide ABC transporter permease {ECO:0000313|EMBL:EYR81669.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 313.0
  • Bit_score: 566
  • Evalue 3.30e-158
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 68.1
  • Coverage: 313.0
  • Bit_score: 431
  • Evalue 2.90e-118

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 942
ATGGTCCGCTTCATCCTGACCCGGATCGCCTCGTCGATCCCGACCCTGTTCCTGGTCTCGATCATTGTCTTCGTGCTGATGCGCATGATTCCGGGCGATCCGGCGGCGTTGATGCTGGGCGATCTCGCCCAGCCGGGACAGGTGGAAGCCTTGCGCGCCGAAATGGGCCTCGATCGGCCGATCGCGCTGCAATATCTCTATTGGCTCGGCAATGTGCTGACCGGCGATTTCGGCCAGTCGATCTCCACCCGCCAGGCCGTCCTGCCGCTGATCCTCGAACGCTTCTCCGTCTCGGCGACCATCGTTCTCGTGGCCGTTCTGTTCGCCACCGTCATCGCCGTGCCGGCCGGCATGTTCGCCGCCTGGCGGCAGAACCGCAGTGGCGATATCGCCGTGATCGCGGCCTCCACGCTGTTGCTGTCGATCCCGAGTTTCTGGGCCGGGTTGATGCTGCTTCTGATCTTCGGATTAAAGCTCGGCTGGCTGCCGGTCGTCGGCTATGGGCCATTCAGCCGCGATTTCGGCAGCGCATTGCTTTATATCATCCTGCCCGTCGTCACGCTGGTTCTGGTCGAATCCGGCTCGATCACCCGCATGGCGCGGGCCAGCACCATCGAGGTGGCGCGGCTGGAATATATCACCCATGCGCGCGCCAAGGGCCTGTCGGAGGCGGCGGTCATGTGGCGCCATGCCTTCAAGAACGCCTTTGCCCCGACCTTGACGCTGATCGGCTTGGTTCTCGGCAGCCTGCTTGCCAATATCGCCGTCATCGAGACCGTCTTTACCATTCCCGGCCTCGGCCGCCTGCTGGTCGACGGCATCTATGCCCGCGATTATCCCGTCGTGCAGGGCTGCCTGCTGTTTACGGCCTTTATCTATGTGGTGGTCAACCTGCTGGTCGATCTCCTTTATCCGCTCCTCGATCCAAGGGTGACGGCATGA
PROTEIN sequence
Length: 314
MVRFILTRIASSIPTLFLVSIIVFVLMRMIPGDPAALMLGDLAQPGQVEALRAEMGLDRPIALQYLYWLGNVLTGDFGQSISTRQAVLPLILERFSVSATIVLVAVLFATVIAVPAGMFAAWRQNRSGDIAVIAASTLLLSIPSFWAGLMLLLIFGLKLGWLPVVGYGPFSRDFGSALLYIILPVVTLVLVESGSITRMARASTIEVARLEYITHARAKGLSEAAVMWRHAFKNAFAPTLTLIGLVLGSLLANIAVIETVFTIPGLGRLLVDGIYARDYPVVQGCLLFTAFIYVVVNLLVDLLYPLLDPRVTA*