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scnpilot_expt_750_p_scaffold_1055_curated_14

Organism: scnpilot_dereplicated_Sphingobacterium_1

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 16591..17832

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS86_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 71.3
  • Coverage: 408.0
  • Bit_score: 589
  • Evalue 2.00e-165
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 71.3
  • Coverage: 408.0
  • Bit_score: 589
  • Evalue 6.40e-166
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ACU03431.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 408.0
  • Bit_score: 589
  • Evalue 2.80e-165

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1242
ATGGATCCAGATTTTCTAAAACAGCTTTTCCAGCAAGAATTTACCAAAATAGTCGCTGTCATCAGCAAGAGTTTTGGCCTCCAGTACATCGAAATAGCGGAAGATATCGTCAGCGAAACGTTCTTAGTTGCCACAGAATCCTGGCAGACCAAAGGCGTTCCTGCAAATCCTACGGCTTGGCTGTACAGGGTTGCAAAACAAAAAACCTTGGCCCAGTTTAGAAGAAATAAAATATTTACAGATAAAATCATCCCGGTAGTACGGCAGCGGGAGCCAGAAGCGGAGAGCTTTGACGAGTTTAGTTTCTCGCAGGAAAATATTAAAGACAGCCAATTAAAAATGCTGTTTGCCATCTGCACGCCAGCAATTGCCAGTGAGGCACAAATTGGTCTTGCCCTTAGAATCCTCTGTGGTTTTGGTATAGAAGAAATTGCCGAAGCATTTCTTTCCAACAAAGAAACCATCAATAAGCGCCTATTCAGAGCAAAGGAAAAACTACGTTCAGAAAAAATCGAACTCGAACTGCCTTCCGAAACAGAAATTATCAAACGCCTCGATAATGTACTCCATATTATTTACCTCTTATTTAATGAAGGGTATTATTCTAAAACCCAAAATCAAATTTTACGAAAGGAGCTCTGTATTGAAGCGTTACGCCTTGCGCTTATGCTTTCATCTTATGAAAAAACCAATACACCCAAGACCAATGCGCTCATTGCGCTGATTTGTTTCCATTCTTCCCGCTTCGAGGCAAGGCTGACCAATGAAGGTGATTTCATTTTGTATGAGCAACAGGATGAGGAACGCTGGAATCAAGAACTCATCCATCAGGGGCTTTATTTTCTGAAGAATGCGGCATTGGGCGACGAACTCACATCTTATCATCTGGAGGCGAAAATTGCGCAATGCCATTGTATAAAGGAAGACAGTCCAGAAAAATGGACCGAAATCCTGCAGTGGTATGACCGTTTATTAGTCGTCAATTATTCCCCCGCAGCTGCATTAAATAGAATATTTGCCCTATATAAAGTAAAAGGCGCTAAAGCTGCATTGGCCGAAGTAAAAACCTTACAGCTAGAAGACAACCACTTTTATTTTGTCCTCCTCGGGGAACTTTATCAGGATCTAGATAAAAACAAAGCCATTGCAAACTTCAATAAAGCAAAAAACCTCGCCAAAATAACATTGGAAAAAGAGATTATTCAACAGAAGATTGATGCTATAAAGTCTGCAATGACCTAA
PROTEIN sequence
Length: 414
MDPDFLKQLFQQEFTKIVAVISKSFGLQYIEIAEDIVSETFLVATESWQTKGVPANPTAWLYRVAKQKTLAQFRRNKIFTDKIIPVVRQREPEAESFDEFSFSQENIKDSQLKMLFAICTPAIASEAQIGLALRILCGFGIEEIAEAFLSNKETINKRLFRAKEKLRSEKIELELPSETEIIKRLDNVLHIIYLLFNEGYYSKTQNQILRKELCIEALRLALMLSSYEKTNTPKTNALIALICFHSSRFEARLTNEGDFILYEQQDEERWNQELIHQGLYFLKNAALGDELTSYHLEAKIAQCHCIKEDSPEKWTEILQWYDRLLVVNYSPAAALNRIFALYKVKGAKAALAEVKTLQLEDNHFYFVLLGELYQDLDKNKAIANFNKAKNLAKITLEKEIIQQKIDAIKSAMT*