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SCNpilot_expt_500_bf_scaffold_1978_curated_26

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 25034..25906

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWP8_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 99.3
  • Coverage: 290.0
  • Bit_score: 569
  • Evalue 2.00e-159
RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:ENY82870.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 290.0
  • Bit_score: 569
  • Evalue 2.80e-159
RNA polymerase sigma factor SigJ; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 80.4
  • Coverage: 291.0
  • Bit_score: 457
  • Evalue 3.50e-126

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 873
GTGACAGCGACGGCACCTTCGCATGCGGAAGCGGCGGATGCGGCGGCGAGTTTCGATCCGCTGCGTCCGCTGCTGACGCGCGTCGCCTATCGCATGCTCGGCTCGGTCGCCGATGCCGAGGATGTGGTCCAGGATGCCTTCATCCGCTGGCTCGGCGCCGATCGTGCGTCGGTGCATGAACCTGCTGCCTTTCTGCGGCGCACCGTGACGCGGCTTTGTCTCGACCAGCTCAAATCGGCGCGGGTGCGGCGCGAAACCTATGTCGGACCGTGGCTTCCCGATCCGATTGTCGGCGAGGAGCCCGACGACGATGTTACGCTGCCGCTGATGCTTGCGCTCGAACGGCTATCACCGCTCGAACGCGCGGCCTTTCTGCTCCATGACGTCTTCGGCGTCGGGTTCGACGAAGTCGCGGCGACGATTGGCCGCGATGCGGCGGCGACGCGCCAGCTCGCGACCCGTGCCCGCGCCCACGTCCGCGACGCGCGCCCGCGCTACCGGCTCGAGCGCAAGCGCGGACTCGAAATCGCCAGCGCCTTCTTCGCGGCGTCGCGGAGCGGCGACATGAGCGCGCTCGGCAATTTGCTCGCGGCCGATGTCGGCATGTGGTCCGATGGCGGCGGCAAGCGGCCCGCGGCGATGCAGCCGGTACTCGGCTTCAACCTCGTCATGCGGGTGCATCGCAGCCTGGCGGTCCTGTTCGGAAAATATGCCTCGACGCTGGTCGAGGTCGGGACGATCAACGGATTGCCCGGCTTCGTGACGCGCGAGGCCGATGGCGAATATCAGACGACGGCGCTGGAAATCGAGGATGGGCTGGTCGTCGGCATCTATGTCATGCGCAACCCCGACAAGCTGCGCCATATGCACTAA
PROTEIN sequence
Length: 291
VTATAPSHAEAADAAASFDPLRPLLTRVAYRMLGSVADAEDVVQDAFIRWLGADRASVHEPAAFLRRTVTRLCLDQLKSARVRRETYVGPWLPDPIVGEEPDDDVTLPLMLALERLSPLERAAFLLHDVFGVGFDEVAATIGRDAAATRQLATRARAHVRDARPRYRLERKRGLEIASAFFAASRSGDMSALGNLLAADVGMWSDGGGKRPAAMQPVLGFNLVMRVHRSLAVLFGKYASTLVEVGTINGLPGFVTREADGEYQTTALEIEDGLVVGIYVMRNPDKLRHMH*