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scnpilot_dereplicated_Sphingopyxis_1

scnpilot-dereplicated_Sphingopyxis_sp__MC1_65_1
In projects: scnpilot-dereplicated  |  SCNPILOT_EXPT_500_BF_STEP10  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Sphingopyxis sp. MC1  →  Sphingopyxis  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 103 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_562_curated
Species: Sphingopyxis sp. MC1 (93.41%)
182 185849 bp 65.18 1.00 88.21
SCNpilot_expt_500_bf_scaffold_555_curated
Species: Sphingopyxis sp. MC1 (91.91%)
174 178241 bp 65.18 1.00 88.78
SCNpilot_expt_500_bf_scaffold_720_curated
Species: Sphingopyxis sp. MC1 (81.62%)
137 146816 bp 65.32 1.00 85.78
SCNpilot_expt_500_bf_scaffold_826_curated
Species: Sphingopyxis sp. MC1 (93.33%)
120 114279 bp 65.02 1.00 89.08
SCNpilot_expt_500_bf_scaffold_1135_curated
Species: Sphingopyxis sp. MC1 (96.97%)
101 98647 bp 65.13 1.00 86.64
SCNpilot_expt_500_bf_scaffold_547_curated
Species: Sphingopyxis sp. MC1 (81.18%)
86 83114 bp 65.17 1.00 88.50
SCNpilot_expt_500_bf_scaffold_464_curated
Species: Sphingopyxis sp. MC1 (96.15%)
79 67760 bp 65.32 1.00 87.12
SCNpilot_expt_500_bf_scaffold_1241_curated
Species: Sphingopyxis sp. MC1 (91.67%)
74 68897 bp 63.79 1.00 84.15
SCNpilot_expt_500_bf_scaffold_526_curated
Species: Sphingopyxis sp. MC1 (95.71%)
71 73903 bp 65.53 1.00 92.13
SCNpilot_expt_500_bf_scaffold_478_curated
Species: Sphingopyxis sp. MC1 (95.59%)
68 69963 bp 64.73 1.00 88.16
SCNpilot_expt_500_bf_scaffold_2780_curated
Species: Sphingopyxis sp. MC1 (85.07%)
67 60188 bp 64.15 1.00 85.29
SCNpilot_expt_500_bf_scaffold_1049_curated
Species: Sphingopyxis sp. MC1 (96.97%)
67 65780 bp 64.37 1.00 91.16
SCNpilot_expt_500_bf_scaffold_1148_curated
Species: Sphingopyxis sp. MC1 (96.97%)
66 64370 bp 65.89 1.00 90.78
SCNpilot_expt_500_bf_scaffold_833_curated
Species: Sphingopyxis sp. MC1 (95.31%)
64 55479 bp 65.25 1.00 88.07
SCNpilot_expt_500_bf_scaffold_818_curated
Species: Sphingopyxis sp. MC1 (96.72%)
61 63625 bp 64.87 1.00 90.70
SCNpilot_expt_500_bf_scaffold_812_curated
Species: Sphingopyxis sp. MC1 (86.67%)
60 52582 bp 65.02 1.00 83.20
SCNpilot_expt_500_bf_scaffold_1277_curated
Species: Sphingopyxis sp. MC1 (91.67%)
60 60043 bp 64.43 1.00 84.92
SCNpilot_expt_500_bf_scaffold_629_curated
Species: Sphingopyxis sp. MC1 (73.68%)
57 50451 bp 65.34 1.00 89.17
SCNpilot_expt_500_bf_scaffold_771_curated
Species: Sphingopyxis sp. MC1 (90.91%)
56 50428 bp 65.51 1.00 87.02
SCNpilot_expt_500_bf_scaffold_930_curated
Order: Sphingomonadales (83.02%)
55 52508 bp 64.02 1.00 91.09
SCNpilot_expt_500_bf_scaffold_884_curated
Species: Sphingopyxis sp. MC1 (94%)
51 56703 bp 64.90 1.00 86.70
SCNpilot_expt_500_bf_scaffold_368_curated
Species: Sphingopyxis sp. MC1 (87.76%)
49 56248 bp 65.57 1.00 91.86
SCNpilot_expt_500_bf_scaffold_1540_curated
Species: Sphingopyxis sp. MC1 (89.36%)
48 45630 bp 64.71 1.00 85.88
SCNpilot_expt_500_bf_scaffold_751_curated
Species: Sphingopyxis sp. MC1 (91.11%)
45 52066 bp 64.09 1.00 84.26
SCNpilot_expt_500_bf_scaffold_1174_curated
Genus: Sphingopyxis (54.55%)
44 41745 bp 65.01 1.00 89.16
SCNpilot_expt_500_bf_scaffold_1978_curated
Species: Sphingopyxis sp. MC1 (97.67%)
44 47695 bp 63.84 1.00 88.93
SCNpilot_expt_500_bf_scaffold_1286_curated
Class: Alphaproteobacteria (51.22%)
43 26222 bp 65.82 1.00 94.81
SCNpilot_expt_500_bf_scaffold_844_curated
Species: Sphingopyxis sp. MC1 (97.67%)
43 43166 bp 66.36 1.00 91.86
SCNpilot_expt_500_bf_scaffold_397_curated
Species: Sphingopyxis sp. MC1 (92.86%)
42 38886 bp 65.15 1.00 90.75
SCNpilot_expt_500_bf_scaffold_5352_curated
Species: Sphingopyxis sp. MC1 (70.73%)
41 32447 bp 63.64 1.00 83.09
SCNpilot_expt_500_bf_scaffold_765_curated
Order: Sphingomonadales (92.5%)
40 40461 bp 63.37 1.00 85.16
SCNpilot_expt_500_bf_scaffold_1868_curated
Species: Sphingopyxis sp. MC1 (68.42%)
38 32971 bp 63.90 1.00 86.58
SCNpilot_expt_500_bf_scaffold_1423_curated
Species: Sphingopyxis sp. MC1 (88.89%)
36 32640 bp 65.09 1.00 90.72
SCNpilot_expt_500_bf_scaffold_1129_curated
Species: Sphingopyxis sp. MC1 (91.18%)
35 26266 bp 65.04 1.00 81.77
SCNpilot_expt_500_bf_scaffold_1112_curated
Species: Sphingopyxis sp. MC1 (88.57%)
35 36239 bp 65.66 1.00 90.25
SCNpilot_expt_500_bf_scaffold_1329_curated
Species: Sphingopyxis sp. MC1 (88.57%)
35 34108 bp 63.86 1.00 83.58
SCNpilot_expt_500_bf_scaffold_1382_curated
Species: Sphingopyxis sp. MC1 (90.91%)
33 33121 bp 66.24 1.00 89.54
SCNpilot_expt_500_bf_scaffold_2188_curated
Species: Sphingopyxis sp. MC1 (83.87%)
33 34158 bp 61.98 1.00 83.75
SCNpilot_expt_500_bf_scaffold_758_curated
Species: Sphingopyxis sp. MC1 (96.67%)
31 33754 bp 66.26 1.00 91.02
SCNpilot_expt_500_bf_scaffold_2886_curated
Species: Sphingopyxis sp. MC1 (80%)
30 25284 bp 62.79 1.00 89.81
SCNpilot_expt_500_bf_scaffold_723_curated
Species: Sphingopyxis sp. MC1 (100%)
30 27343 bp 66.29 1.00 94.75
SCNpilot_expt_500_bf_scaffold_917_curated
Species: Sphingopyxis fribergensis (96%)
25 27022 bp 62.05 1.00 87.28
SCNpilot_expt_500_bf_scaffold_1405_curated
Order: Sphingomonadales (60.87%)
24 19219 bp 62.09 1.00 81.37
SCNpilot_expt_500_bf_scaffold_2521_curated
Species: Sphingopyxis sp. MC1 (87.5%)
24 22078 bp 64.23 1.00 93.24
SCNpilot_expt_500_bf_scaffold_1105_curated
Species: Sphingopyxis sp. MC1 (91.67%)
24 24902 bp 66.39 1.00 93.84
SCNpilot_expt_500_bf_scaffold_2904_curated
Species: Sphingopyxis sp. MC1 (100%)
22 23360 bp 67.03 1.00 92.11
SCNpilot_expt_500_bf_scaffold_1552_curated
Species: Sphingopyxis sp. MC1 (94.74%)
20 19617 bp 64.23 1.00 83.24
SCNpilot_expt_500_bf_scaffold_1977_curated
Genus: Sphingopyxis (55%)
20 19012 bp 61.60 1.00 82.50
SCNpilot_expt_500_bf_scaffold_2911_curated
Species: Sphingopyxis sp. MC1 (90%)
20 18108 bp 62.50 1.00 87.44
SCNpilot_expt_500_bf_scaffold_2070_curated
Species: Sphingopyxis sp. MC1 (95%)
20 22805 bp 65.56 1.00 84.38
Displaying items 1-50 of 103 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.