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SCNpilot_expt_500_bf_scaffold_526_curated

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_526_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1251)
DNA (1251bp) protein (417aa)
Poly(R)-hydroxyalkanoic acid synthase, class I; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Polyhydroxyalkanoate synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYW5_9SPHN
Polyhydroxyalkanoate synthase {ECO:0000313|EMBL:ENY80447.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_526_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1373..2584
DNA (1212bp) protein (404aa)
aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Aminotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9P4_9SPHN
Aminotransferase {ECO:0000313|EMBL:ENY80448.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_526_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2590..3039
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ20_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80449.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_526_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3042..4715)
DNA (1674bp) protein (558aa)
Amidase {ECO:0000313|EMBL:ENY80450.1}; EC=3.5.1.4 {ECO:0000313|EMBL:ENY80450.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
amidase (EC:3.5.1.4); K01426 amidase [EC:3.5.1.4] rbh
Amidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPR7_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..6041
DNA (1314bp) protein (438aa)
Major facilitator superfamily protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAG5_9SPHN
Major facilitator superfamily protein {ECO:0000313|EMBL:ENY80451.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator superfamily protein
SCNpilot_expt_500_bf_scaffold_526_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6038..6628)
DNA (591bp) protein (197aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYX0_9SPHN
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ENY80452.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
NADPH-dependent FMN reductase
SCNpilot_expt_500_bf_scaffold_526_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6724..7626
DNA (903bp) protein (301aa)
Haloalkane dehalogenase {ECO:0000313|EMBL:ENY80453.1}; EC=3.8.1.5 {ECO:0000313|EMBL:ENY80453.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
dhlA; haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5]
Haloalkane dehalogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9P9_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7615..8073)
DNA (459bp) protein (153aa)
AsnC family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ25_9SPHN
AsnC family transcriptional regulator {ECO:0000313|EMBL:ENY80454.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_526_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8623..9348
DNA (726bp) protein (242aa)
Methionine gamma-lyase {ECO:0000313|EMBL:ENY80455.1}; EC=4.4.1.11 {ECO:0000313|EMBL:ENY80455.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
methionine gamma-lyase (EC:4.4.1.11); K01761 methionine-gamma-lyase [EC:4.4.1.11]
Methionine gamma-lyase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPS3_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9362..10651)
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
adenylosuccinate synthetase; K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAH0_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10858..11802
DNA (945bp) protein (315aa)
LipQ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYX6_9SPHN
LipQ {ECO:0000313|EMBL:ENY80457.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LipQ
SCNpilot_expt_500_bf_scaffold_526_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12038..12415
DNA (378bp) protein (126aa)
aromatic ring-cleaving dioxygenase-like protein; K10253 DOPA 4,5-dioxygenase [EC:1.14.99.-]
Aromatic ring-cleaving dioxygenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9Q5_9SPHN
Aromatic ring-cleaving dioxygenase-like protein {ECO:0000313|EMBL:ENY80458.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_526_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12412..13527)
DNA (1116bp) protein (372aa)
tRNA synthetase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ29_9SPHN
tRNA synthetase {ECO:0000313|EMBL:ENY80459.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tRNA synthetase; K02502 ATP phosphoribosyltransferase regulatory subunit
SCNpilot_expt_500_bf_scaffold_526_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13730..15316)
DNA (1587bp) protein (529aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPS8_9SPHN
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ENY80460.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_526_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15425..16549)
DNA (1125bp) protein (375aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAH5_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16721..17422
DNA (702bp) protein (234aa)
Extensin-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYY2_9SPHN
Extensin-like protein {ECO:0000313|EMBL:ENY80462.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
extensin-like protein
SCNpilot_expt_500_bf_scaffold_526_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17480..18352
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9R0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80463.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K06966
SCNpilot_expt_500_bf_scaffold_526_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18407..18703)
DNA (297bp) protein (99aa)
Cytochrome c, class I n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ34_9SPHN
Cytochrome c, class I {ECO:0000313|EMBL:ENY80464.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cytochrome c, class I; K08738 cytochrome c
SCNpilot_expt_500_bf_scaffold_526_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18747..19463)
DNA (717bp) protein (239aa)
Cytochrome c, class I n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPT3_9SPHN
Cytochrome c, class I {ECO:0000313|EMBL:ENY80465.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cytochrome c, class I; K08738 cytochrome c
SCNpilot_expt_500_bf_scaffold_526_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19607..20530
DNA (924bp) protein (308aa)
Prephenate dehydratase {ECO:0000313|EMBL:ENY80466.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ENY80466.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
prephenate dehydratase; K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAH9_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20537..21211)
DNA (675bp) protein (225aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYY8_9SPHN
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ENY80467.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
CDP-alcohol phosphatidyltransferase
SCNpilot_expt_500_bf_scaffold_526_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21362..21853)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9R5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80468.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_526_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21850..24663)
DNA (2814bp) protein (938aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ40_9SPHN
DNA polymerase I {ECO:0000313|EMBL:ENY80469.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_526_curated_24
unknown

Not on your lists

24853..25158
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_526_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25359..26540)
DNA (1182bp) protein (394aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobact
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPT7_9SPHN
purT; phosphoribosylglycinamide formyltransferase 2
SCNpilot_expt_500_bf_scaffold_526_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26537..27028)
DNA (492bp) protein (164aa)
Glutathione-dependent formaldehyde-activating protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAI1_9SPHN
Glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:ENY80471.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_500_bf_scaffold_526_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27035..28621)
DNA (1587bp) protein (529aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYZ5_9SPHN
SCNpilot_expt_500_bf_scaffold_526_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28833..31274
DNA (2442bp) protein (814aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9S0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80473.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_526_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31271..32320)
DNA (1050bp) protein (350aa)
Group 1 glycosyl transferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ45_9SPHN
Group 1 glycosyl transferase {ECO:0000313|EMBL:ENY80474.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
group 1 glycosyl transferase
SCNpilot_expt_500_bf_scaffold_526_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32328..33209)
DNA (882bp) protein (294aa)
Metallophosphoesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPU2_9SPHN
Metallophosphoesterase {ECO:0000313|EMBL:ENY80475.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
metallophosphoesterase
Displaying items 1-30 of 71 in total

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