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SCNpilot_expt_500_bf_scaffold_1105_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1105_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..260
DNA (258bp) protein (86aa)
Nicotinamide mononucleotide transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W411_9SPHN
Nicotinamide mononucleotide transporter {ECO:0000313|EMBL:ENY82267.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
nicotinamide mononucleotide transporter; K03811 nicotinamide mononucleotide transporter
SCNpilot_expt_500_bf_scaffold_1105_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..778
DNA (522bp) protein (174aa)
NAD metabolism ATPase/kinase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFR6_9SPHN
NAD metabolism ATPase/kinase-like protein {ECO:0000313|EMBL:ENY82266.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
NAD metabolism ATPase/kinase-like protein
SCNpilot_expt_500_bf_scaffold_1105_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(842..1537)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUZ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82265.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1105_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1658..2674)
DNA (1017bp) protein (339aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVH2_9SPHN
SCNpilot_expt_500_bf_scaffold_1105_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2678..4276)
DNA (1599bp) protein (533aa)
Virulence factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEX4_9SPHN
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
virulence factor; K03980 virulence factor
SCNpilot_expt_500_bf_scaffold_1105_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4315..4827)
DNA (513bp) protein (171aa)
Protein-export protein SecB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W408_9SPHN
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
protein-export protein SecB; K03071 preprotein translocase subunit SecB
SCNpilot_expt_500_bf_scaffold_1105_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5090..5725
DNA (636bp) protein (212aa)
Import inner membrane translocase subunit Tim44 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFR2_9SPHN
Import inner membrane translocase subunit Tim44 {ECO:0000313|EMBL:ENY82261.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
import inner membrane translocase subunit Tim44
SCNpilot_expt_500_bf_scaffold_1105_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5737..7095
DNA (1359bp) protein (453aa)
MltA protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
MltA protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUZ0_9SPHN
MltA protein {ECO:0000313|EMBL:ENY82260.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1105_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7102..7668
DNA (567bp) protein (189aa)
Smr protein/MutS2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG9_9SPHN
Smr protein/MutS2 {ECO:0000313|EMBL:ENY82259.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Smr protein/MutS2
SCNpilot_expt_500_bf_scaffold_1105_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7672..8799)
DNA (1128bp) protein (376aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEX0_9SPHN
SCNpilot_expt_500_bf_scaffold_1105_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8900..9367
DNA (468bp) protein (156aa)
Cupin n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W405_9SPHN
Cupin {ECO:0000313|EMBL:ENY82257.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cupin
SCNpilot_expt_500_bf_scaffold_1105_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9364..9984
DNA (621bp) protein (207aa)
Lysine exporter protein LysE/YggA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFQ9_9SPHN
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:ENY82256.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_500_bf_scaffold_1105_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10144..11025
DNA (882bp) protein (294aa)
OmpA/MotB protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUY6_9SPHN
OmpA/MotB protein {ECO:0000313|EMBL:ENY82255.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
OmpA/MotB protein
SCNpilot_expt_500_bf_scaffold_1105_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11192..13528
DNA (2337bp) protein (779aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEAD/DEAH box helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG6_9SPHN
DEAD/DEAH box helicase {ECO:0000313|EMBL:ENY82254.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1105_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13605..14663
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEW6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82253.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1105_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14721..15437
DNA (717bp) protein (239aa)
Metallophosphoesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W402_9SPHN
Metallophosphoesterase {ECO:0000313|EMBL:ENY82252.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
metallophosphoesterase
SCNpilot_expt_500_bf_scaffold_1105_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15597..18413
DNA (2817bp) protein (939aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFQ6_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY82251.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1105_curated_18
unknown

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18493..19080
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1105_curated_19
unknown

Not on your lists

comp(19048..19254)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1105_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19315..20301
DNA (987bp) protein (329aa)
Na(+):H(+) antiporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUY2_9SPHN
Na(+):H(+) antiporter {ECO:0000313|EMBL:ENY82250.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Na(+):H(+) antiporter
SCNpilot_expt_500_bf_scaffold_1105_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20312..21343)
DNA (1032bp) protein (344aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III subunit delta n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG2_9SPHN
DNA polymerase III subunit delta {ECO:0000313|EMBL:ENY82249.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1105_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21349..21885)
DNA (537bp) protein (179aa)
Secreted (Periplasmic)-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEW2_9SPHN
Secreted (Periplasmic)-like protein {ECO:0000313|EMBL:ENY82248.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K03643 LPS-assembly lipoprotein
SCNpilot_expt_500_bf_scaffold_1105_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21887..24436)
DNA (2550bp) protein (850aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3Z7_9SPHN
SCNpilot_expt_500_bf_scaffold_1105_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24631..24900)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFQ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82246.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying 24 items

View Taxonomy