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SCNpilot_expt_500_bf_scaffold_1552_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1552_curated_1
unknown

Not on your lists

comp(3..92)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1552_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

457..612
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGE5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82738.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

620..1459
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82739.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..3177)
DNA (1251bp) protein (417aa)
twin-arginine translocation pathway signal; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Twin-arginine translocation pathway signal n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWE7_9SPHN
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ENY82740.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3188..4393)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH25_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82741.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4390..4956)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5D8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82742.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5359..6600
DNA (1242bp) protein (414aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWX9_9SPHN
SCNpilot_expt_500_bf_scaffold_1552_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6677..7018
DNA (342bp) protein (114aa)
Type IV pilus assembly PilZ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF1_9SPHN
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ENY82745.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
type IV pilus assembly PilZ
SCNpilot_expt_500_bf_scaffold_1552_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7166..9232)
DNA (2067bp) protein (689aa)
DEAD/DEAH box helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
DEAD/DEAH box helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH30_9SPHN
DEAD/DEAH box helicase {ECO:0000313|EMBL:ENY82746.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9439..9699
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82747.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_11
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9681..11552)
DNA (1872bp) protein (624aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_500_bf_scaffold_1552_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12249..13142
DNA (894bp) protein (298aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGF4_9SPHN
SCNpilot_expt_500_bf_scaffold_1552_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13162..14358)
DNA (1197bp) protein (399aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWY3_9SPHN
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ENY82749.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_1552_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14533..15426
DNA (894bp) protein (298aa)
Molybdenum cofactor synthesis-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF4_9SPHN
Molybdenum cofactor synthesis-like protein {ECO:0000313|EMBL:ENY82750.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
molybdenum cofactor synthesis-like protein; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_expt_500_bf_scaffold_1552_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15448..16218
DNA (771bp) protein (257aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH32_9SPHN
SCNpilot_expt_500_bf_scaffold_1552_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16279..16725
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82752.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16969..17964)
DNA (996bp) protein (332aa)
Transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGF6_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:ENY82753.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1552_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18342..18761
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82755.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18758..19429
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH37_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82756.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19472..19615
DNA (144bp) protein (48aa)
Transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E7_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:ENY82757.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying 20 items

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