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SCNpilot_expt_500_bf_scaffold_1552_curated_12

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 12249..13142

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.7
  • Coverage: 297.0
  • Bit_score: 572
  • Evalue 2.60e-160
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 94.6
  • Coverage: 295.0
  • Bit_score: 553
  • Evalue 4.80e-155
Transcription-repair-coupling factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGF4_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 98.7
  • Coverage: 297.0
  • Bit_score: 572
  • Evalue 1.80e-160

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 894
ATGAGCGCCTTCTACGATCGCAAATATGACGTGCTCGTATCGACCACGATCGTCGAAAGCGGCCTCGACATTCCGAGCGCCAACACCTTGATCGTGCACCGCGCCGACCGTTTCGGCCTTGCCCAGCTTTACCAGCTCCGCGGCCGCGTCGGCCGGTCAAAGACGCGCGCCTACGCGTACCTCACGACGCCCGAGGGCGGCGCGATCACCGACACCGCCGAAAAGCGGCTCAAGCTGCTCGGCGATCTCGACACCTTGGGGGCCGGCTTCCAGCTTGCGAGTCACGACCTCGACATTCGCGGCGCCGGCAATCTCGTTGGCGACGAACAGTCGGGACATATTCGCGAGGTCGGCTTCGAACTCTATCAATCGATGCTCGAAGAGGCGATCCTCGTCGCCAAGGCCGAAGGTGCCGGCGTCGCGCCGCCGCGCGAGGCCTTGTCGCCCGTTATCACGGTCGATGCGCCGATCCTTATCCCTGAAGATTATGTGCCCGATCTGCCGCTACGCATGGCGCTCTATCGTCGCCTCAACGAGGCCGAGGACCGTACCGGGCTCGACGGTTTCGCGGCGGAGATGATCGACCGCTTCGGCCCGCTGCCGCCCGAAACCGCGAACCTCATCCAGCTCATGGAGATCAAGGCGAACGCGAGGGCGGCTGGCATCGCCAAGCTCGACGTCGGCACCAAGGGCGCCCTCGTCAGCTTCCACGGCGACCAGTTCGCCAATGTCCCCGGTCTGATCGCCTATGTCGAGCGGCTGAAGGGCCGCGCGCGCATCCGCCCCGACAACAAGCTGTCGGTGAGCGGCGACTGGGTCAGCGCAGGCGCGCGGCTCAACGGCGCACTGCAACTGTCGAAAGGTTTGGGGAAACTCGCACGGCAGGCGGGCTAG
PROTEIN sequence
Length: 298
MSAFYDRKYDVLVSTTIVESGLDIPSANTLIVHRADRFGLAQLYQLRGRVGRSKTRAYAYLTTPEGGAITDTAEKRLKLLGDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGAGVAPPREALSPVITVDAPILIPEDYVPDLPLRMALYRRLNEAEDRTGLDGFAAEMIDRFGPLPPETANLIQLMEIKANARAAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARIRPDNKLSVSGDWVSAGARLNGALQLSKGLGKLARQAG*