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SCNpilot_expt_500_bf_scaffold_1405_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1405_curated_1
unknown

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comp(1..243)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_2
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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669..1382
DNA (714bp) protein (238aa)
Symbiosis island integrase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N8A1_ERYLH
symbiosis island integrase
Symbiosis island integrase {ECO:0000313|EMBL:ABC64090.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_500_bf_scaffold_1405_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1331..1507)
DNA (177bp) protein (59aa)
Glucose/galactose transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT63_9SPHN
Glucose/galactose transporter {ECO:0000313|EMBL:ENY81509.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glucose/galactose transporter; K02429 MFS transporter, FHS family, L-fucose permease
SCNpilot_expt_500_bf_scaffold_1405_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2625..3833)
DNA (1209bp) protein (403aa)
Major facilitator superfamily transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ7_9SPHN
Major facilitator superfamily transporter {ECO:0000313|EMBL:ENY81510.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_1405_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3947..6574)
DNA (2628bp) protein (876aa)
Putative TonB dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDF6_9SPHN
Putative TonB dependent receptor {ECO:0000313|EMBL:ENY81511.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative TonB dependent receptor
SCNpilot_expt_500_bf_scaffold_1405_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6598..9114)
DNA (2517bp) protein (839aa)
beta-glucosidase (EC:3.2.1.21)
Glucan 1,4-beta-glucosidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1Z0_9SPHN
Glucan 1,4-beta-glucosidase {ECO:0000313|EMBL:ENY81512.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1405_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9354..10289
DNA (936bp) protein (312aa)
LacI family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCL8_9SPHN
LacI family transcriptional regulator {ECO:0000313|EMBL:ENY81513.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1405_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10299..11522)
DNA (1224bp) protein (408aa)
Glucanase {ECO:0000256|RuleBase:RU361186}; EC=3.2.1.- {ECO:0000256|RuleBase:RU361186};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cellulase (EC:3.2.1.4)
Cellulase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT68_9SPHN
SCNpilot_expt_500_bf_scaffold_1405_curated_9
unknown

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comp(11611..11829)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12026..12835)
DNA (810bp) protein (270aa)
Transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USR3_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:ENY81515.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1405_curated_11
unknown

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comp(12907..13446)
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14071..14352)
DNA (282bp) protein (94aa)
Alcohol dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1Z7_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:ENY81517.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
alcohol dehydrogenase
SCNpilot_expt_500_bf_scaffold_1405_curated_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14620..14880)
DNA (261bp) protein (87aa)
Phage transcriptional regulator, AlpA n=1 Tax=Acidiphilium sp. PM RepID=F7SB43_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AJR24524.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_500_bf_scaffold_1405_curated_14
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14877..15470)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003729608
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_1405_curated_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15467..15994)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GG31_NITSI
Uncharacterized protein {ECO:0000313|EMBL:KFD27046.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1405_curated_16
unknown

Not on your lists

comp(15994..16290)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_17
unknown

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comp(16292..16864)
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_18
unknown

Not on your lists

comp(16861..17073)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1405_curated_19
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17070..17300)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ICS2_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL57483.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_500_bf_scaffold_1405_curated_20
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17297..17611)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ICS2_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL57483.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_500_bf_scaffold_1405_curated_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17608..17802)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E9CAE3
Uncharacterized protein {ECO:0000313|EMBL:EZP57446.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_1405_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17795..18070)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D7ED2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF01535.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_500_bf_scaffold_1405_curated_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18067..18495)
DNA (429bp) protein (143aa)
UPI0003D6568C related cluster n=1 Tax=unknown RepID=UPI0003D6568C
Uncharacterized protein {ECO:0000313|EMBL:ETI62979.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1405_curated_24
unknown

Not on your lists

comp(18991..19218)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying 24 items

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