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SCNpilot_expt_500_bf_scaffold_1540_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1540_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..186
DNA (186bp) protein (62aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53]
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC72_9SPHN
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ENY81348.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210..719
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81349.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

719..844
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81349.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(850..1470)
DNA (621bp) protein (207aa)
Type IV pilus assembly PilZ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USA8_9SPHN
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ENY81350.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
type IV pilus assembly PilZ
SCNpilot_expt_500_bf_scaffold_1540_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1769..2623)
DNA (855bp) protein (285aa)
putative DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase D n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCZ2_9SPHN
DNA ligase D {ECO:0000313|EMBL:ENY81351.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3629..4330
DNA (702bp) protein (234aa)
Putative histidine kinase n=1 Tax=Pseudomonas aeruginosa 39016 RepID=E3A3I6_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI76123.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4433..5293)
DNA (861bp) protein (287aa)
Probable DNA repair protein EBMC1_09869 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1K0_9SPHN
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Ku family containing protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_500_bf_scaffold_1540_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5540..6994)
DNA (1455bp) protein (485aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
Aldehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC77_9SPHN
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7161..8348
DNA (1188bp) protein (396aa)
Acetyl-CoA C-acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA C-acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ5_9SPHN
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:ENY81354.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8628..9092
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USB1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81355.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9176..9634)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCZ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81356.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9771..10769
DNA (999bp) protein (333aa)
glycolate reductase; K00015 glyoxylate reductase [EC:1.1.1.26]
Glycolate reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1K5_9SPHN
Glycolate reductase {ECO:0000313|EMBL:ENY81357.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_13
unknown

Not on your lists

comp(10766..11170)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1540_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11188..12237)
DNA (1050bp) protein (350aa)
2-nitropropane dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC80_9SPHN
2-nitropropane dioxygenase {ECO:0000313|EMBL:ENY81358.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
2-nitropropane dioxygenase
SCNpilot_expt_500_bf_scaffold_1540_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12213..12557)
DNA (345bp) protein (115aa)
2-nitropropane dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC80_9SPHN
2-nitropropane dioxygenase {ECO:0000313|EMBL:ENY81358.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
2-nitropropane dioxygenase
SCNpilot_expt_500_bf_scaffold_1540_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12643..13845)
DNA (1203bp) protein (401aa)
Group 1 glycosyl transferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ9_9SPHN
Group 1 glycosyl transferase {ECO:0000313|EMBL:ENY81359.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
group 1 glycosyl transferase
SCNpilot_expt_500_bf_scaffold_1540_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13842..14732)
DNA (891bp) protein (297aa)
Alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USB6_9SPHN
Alpha/beta hydrolase {ECO:0000313|EMBL:ENY81360.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_1540_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14962..16407
DNA (1446bp) protein (482aa)
Succinylglutamate-semialdehyde dehydrogenase {ECO:0000256|SAAS:SAAS00007761}; EC=1.2.1.71 {ECO:0000256|SAAS:SAAS00007761};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
astD; succinylglutamic semialdehyde dehydrogenase; K06447 succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
Succinylglutamic semialdehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCZ9_9SPHN
SCNpilot_expt_500_bf_scaffold_1540_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16645..17226
DNA (582bp) protein (194aa)
uroporphyrin-III C-methyltransferase; K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
Uroporphyrin-III C-methyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1K8_9SPHN
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:ENY81362.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_20
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17223..17519
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV31_SPHAL
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_1540_curated_21
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17521..19152
DNA (1632bp) protein (544aa)
nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV32_SPHAL
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein {ECO:0000313|EMBL:KGB53776.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19145..19591
DNA (447bp) protein (149aa)
Uncharacterized conserved protein UCP030820 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV33_SPHAL
hypothetical protein
Uncharacterized conserved protein UCP030820 {ECO:0000313|EMBL:ABF52489.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1540_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19584..20369
DNA (786bp) protein (262aa)
Phosphoadenylyl-sulfate reductase (thioredoxin) {ECO:0000256|SAAS:SAAS00089161}; EC=1.8.4.8 {ECO:0000256|SAAS:SAAS00089161};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phosphoadenosine phosphosulfate reductase; K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8]
Phosphoadenosine phosphosulfate reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD03_9SPHN
SCNpilot_expt_500_bf_scaffold_1540_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20494..22005)
DNA (1512bp) protein (504aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1L4_9SPHN
Replicative DNA helicase {ECO:0000313|EMBL:ENY81367.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1540_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22134..22631
DNA (498bp) protein (166aa)
UPF0262 protein EBMC1_09949 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC90_9SPHN
UPF0262 protein EBMC1_09949 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22634..23782
DNA (1149bp) protein (383aa)
Glycoside hydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USS0_9SPHN
Glycoside hydrolase {ECO:0000313|EMBL:ENY81369.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glycoside hydrolase; K07273 lysozyme
SCNpilot_expt_500_bf_scaffold_1540_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23822..24376
DNA (555bp) protein (185aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13]
Deoxycytidine triphosphate deaminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1M0_9SPHN
SCNpilot_expt_500_bf_scaffold_1540_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24431..24607)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC94_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81373.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09946 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1540_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24692..25831)
DNA (1140bp) protein (380aa)
FAD dependent oxidoreductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USS5_9SPHN
FAD dependent oxidoreductase {ECO:0000313|EMBL:ENY81374.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
FAD dependent oxidoreductase
SCNpilot_expt_500_bf_scaffold_1540_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25926..26414
DNA (489bp) protein (163aa)
peptidase A24A, prepilin type IV; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
Peptidase A24A, prepilin type IV n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USC9_9SPHN
Peptidase A24A, prepilin type IV {ECO:0000313|EMBL:ENY81375.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying items 1-30 of 48 in total

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