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SCNpilot_expt_500_bf_scaffold_555_curated

Search features with annotation key words

Displaying items 1-30 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_555_curated_1
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34..954
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EQ94_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ84014.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
SCNpilot_expt_500_bf_scaffold_555_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1102..2229
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYM4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80352.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_555_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2341..3354
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9H1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80353.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_555_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3351..5183
DNA (1833bp) protein (611aa)
sulfatase; K01130 arylsulfatase [EC:3.1.6.1]
Sulfatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPT1_9SPHN
Sulfatase {ECO:0000313|EMBL:ENY80354.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5103..6041)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPH9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80355.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_555_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6038..6682)
DNA (645bp) protein (215aa)
TetR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WA83_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:ENY80356.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_555_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6808..7452
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYM7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80357.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7472..7807
DNA (336bp) protein (112aa)
Sulfatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9H3_9SPHN
Sulfatase {ECO:0000313|EMBL:ENY80358.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sulfatase
SCNpilot_expt_500_bf_scaffold_555_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7804..9078
DNA (1275bp) protein (425aa)
Sulfatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9H3_9SPHN
Sulfatase {ECO:0000313|EMBL:ENY80358.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sulfatase
SCNpilot_expt_500_bf_scaffold_555_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9107..9553)
DNA (447bp) protein (149aa)
Transcriptional regulator, trmb n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPT6_9SPHN
Transcriptional regulator, trmb {ECO:0000313|EMBL:ENY80359.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcriptional regulator, trmb
SCNpilot_expt_500_bf_scaffold_555_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9572..11446)
DNA (1875bp) protein (625aa)
peptidase t2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
Peptidase t2 asparaginase 2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPI4_9SPHN
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:ENY80360.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12559..14364
DNA (1806bp) protein (602aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WA87_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80361.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_555_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14451..15455
DNA (1005bp) protein (335aa)
LacI family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYN3_9SPHN
LacI family transcriptional regulator {ECO:0000313|EMBL:ENY80362.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LacI family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_555_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15597..18488
DNA (2892bp) protein (964aa)
beta-phosphoglucomutase; K01838 beta-phosphoglucomutase [EC:5.4.2.6]
Beta-phosphoglucomutase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9H7_9SPHN
Beta-phosphoglucomutase {ECO:0000313|EMBL:ENY80363.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18503..20872
DNA (2370bp) protein (790aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPU0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80364.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_555_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20938..22185
DNA (1248bp) protein (416aa)
Major facilitator superfamily transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPJ1_9SPHN
Major facilitator superfamily transporter {ECO:0000313|EMBL:ENY80365.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_555_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22182..23846)
DNA (1665bp) protein (555aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WA92_9SPHN
SCNpilot_expt_500_bf_scaffold_555_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23843..24646)
DNA (804bp) protein (268aa)
N-formylglutamate amidohydrolase; K01479 formiminoglutamase [EC:3.5.3.8]
N-formylglutamate amidohydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYN8_9SPHN
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ENY80367.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24646..26193)
DNA (1548bp) protein (516aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9I1_9SPHN
SCNpilot_expt_500_bf_scaffold_555_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26172..27377)
DNA (1206bp) protein (402aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
imidazolonepropionase (EC:3.5.2.7)
Imidazolonepropionase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPU4_9SPHN
SCNpilot_expt_500_bf_scaffold_555_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27463..28818
DNA (1356bp) protein (452aa)
N-formimino-L-glutamate deiminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPJ5_9SPHN
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:ENY80370.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hutF; N-formimino-L-glutamate deiminase
SCNpilot_expt_500_bf_scaffold_555_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28815..29519
DNA (705bp) protein (235aa)
GntR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WA95_9SPHN
GntR family transcriptional regulator {ECO:0000313|EMBL:ENY80371.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor
SCNpilot_expt_500_bf_scaffold_555_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29876..30586
DNA (711bp) protein (237aa)
proline iminopeptidase; K01259 proline iminopeptidase [EC:3.4.11.5]
Proline iminopeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYP2_9SPHN
Proline iminopeptidase {ECO:0000313|EMBL:ENY80372.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_555_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30588..31496)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9I4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80373.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_555_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31506..33206)
DNA (1701bp) protein (567aa)
Sulfatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPV1_9SPHN
Sulfatase {ECO:0000313|EMBL:ENY80374.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sulfatase
SCNpilot_expt_500_bf_scaffold_555_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33283..35700)
DNA (2418bp) protein (806aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPJ9_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80375.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_555_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35966..37393
DNA (1428bp) protein (476aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
leuC; isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAA0_9SPHN
SCNpilot_expt_500_bf_scaffold_555_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37390..37968)
DNA (579bp) protein (193aa)
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
Isopropylmalate isomerase small subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYP6_9SPHN
SCNpilot_expt_500_bf_scaffold_555_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38100..38606
DNA (507bp) protein (169aa)
MarR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9I7_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:ENY80378.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_555_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38681..39256
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPV5_9SPHN
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ENY80379.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
NADPH-dependent FMN reductase
Displaying items 1-30 of 174 in total

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