ggKbase home page

SCNpilot_expt_500_bf_scaffold_562_curated

Search features with annotation key words

Displaying items 1-30 of 182 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_562_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35..1417)
DNA (1383bp) protein (461aa)
Flagellar hook-associated 2-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFJ0_9SPHN
Flagellar hook-associated 2-like protein {ECO:0000313|EMBL:ENY82181.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar hook-associated 2-like protein; K02407 flagellar hook-associated protein 2
SCNpilot_expt_500_bf_scaffold_562_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1474..2613)
DNA (1140bp) protein (380aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUQ8_9SPHN
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:ENY82180.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flhB; flagellar biosynthesis protein FlhB; K02401 flagellar biosynthetic protein FlhB
SCNpilot_expt_500_bf_scaffold_562_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2616..3395)
DNA (780bp) protein (260aa)
Flagellar biosynthetic protein FliR n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV92_9SPHN
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR
SCNpilot_expt_500_bf_scaffold_562_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3403..3672)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEP7_9SPHN
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:ENY82178.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar biosynthetic protein FliQ; K02420 flagellar biosynthetic protein FliQ
SCNpilot_expt_500_bf_scaffold_562_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3677..4273)
DNA (597bp) protein (199aa)
Flagellar biosynthesis protein FliP n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3U3_9SPHN
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:ENY82177.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
fliP; flagellar biosynthesis protein FliP; K02419 flagellar biosynthetic protein FliP
SCNpilot_expt_500_bf_scaffold_562_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4384..4662)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFI3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82176.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_562_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4662..5000)
DNA (339bp) protein (113aa)
Flagellar motor switch FliN n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUQ4_9SPHN
Flagellar motor switch FliN {ECO:0000313|EMBL:ENY82175.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar motor switch FliN; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_expt_500_bf_scaffold_562_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4993..5922)
DNA (930bp) protein (310aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV84_9SPHN
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:ENY82174.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
surface presentation of antigens (SPOA) protein; K02416 flagellar motor switch protein FliM
SCNpilot_expt_500_bf_scaffold_562_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5919..6536)
DNA (618bp) protein (206aa)
Flagellar basal body-associated protein FliL n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEN8_9SPHN
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:ENY82173.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar basal body-associated protein FliL; K02415 flagellar FliL protein
SCNpilot_expt_500_bf_scaffold_562_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6557..7282)
DNA (726bp) protein (242aa)
Flagellar hook-length control protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3T6_9SPHN
Flagellar hook-length control protein {ECO:0000313|EMBL:ENY82172.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar hook-length control protein; K02414 flagellar hook-length control protein FliK
SCNpilot_expt_500_bf_scaffold_562_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7930..8373)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFH7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82171.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_562_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8370..9701)
DNA (1332bp) protein (444aa)
ATPase FliI/YscN; K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
ATPase FliI/YscN n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUP8_9SPHN
ATPase FliI/YscN {ECO:0000313|EMBL:ENY82170.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_562_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9698..10294)
DNA (597bp) protein (199aa)
Flagellar biosynthetic protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV79_9SPHN
Flagellar biosynthetic protein {ECO:0000313|EMBL:ENY82169.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar biosynthetic protein; K02411 flagellar assembly protein FliH
SCNpilot_expt_500_bf_scaffold_562_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10287..11333)
DNA (1047bp) protein (349aa)
Flagellar motor switch protein FliG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEN2_9SPHN
Flagellar motor switch protein FliG {ECO:0000313|EMBL:ENY82168.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG
SCNpilot_expt_500_bf_scaffold_562_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11326..12978)
DNA (1653bp) protein (551aa)
Flagellar M-ring protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3T1_9SPHN
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF
SCNpilot_expt_500_bf_scaffold_562_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12982..13323)
DNA (342bp) protein (114aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFH0_9SPHN
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellar hook-basal body complex protein (FliE); K02408 flagellar hook-basal body complex protein FliE
SCNpilot_expt_500_bf_scaffold_562_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13570..14388
DNA (819bp) protein (273aa)
Flagellin-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUP0_9SPHN
Flagellin-like protein {ECO:0000313|EMBL:ENY82165.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flagellin-like protein; K02406 flagellin
SCNpilot_expt_500_bf_scaffold_562_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14509..17790)
DNA (3282bp) protein (1094aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DNA polymerase III subunit alpha; K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV72_9SPHN
SCNpilot_expt_500_bf_scaffold_562_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17787..19148)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82163.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K14161 protein ImuB
SCNpilot_expt_500_bf_scaffold_562_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19240..20025)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3S4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82162.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_562_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20106..21506)
DNA (1401bp) protein (467aa)
RND efflux system outer membrane lipoprotein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFG5_9SPHN
RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:ENY82161.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
RND efflux system outer membrane lipoprotein
SCNpilot_expt_500_bf_scaffold_562_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21503..24697)
DNA (3195bp) protein (1065aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUN4_9SPHN
Hydrophobe/amphiphile efflux-1 (HAE1) family protein {ECO:0000313|EMBL:ENY82160.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein
SCNpilot_expt_500_bf_scaffold_562_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24704..25894)
DNA (1191bp) protein (397aa)
Membrane fusion protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV65_9SPHN
Membrane fusion protein {ECO:0000313|EMBL:ENY82159.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
membrane fusion protein; K03585 membrane fusion protein
SCNpilot_expt_500_bf_scaffold_562_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25999..26856)
DNA (858bp) protein (286aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEL8_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:ENY82158.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_562_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26958..28454
DNA (1497bp) protein (499aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3R9_9SPHN
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ENY82157.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_562_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28545..29108
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFF9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82156.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_562_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29133..29441
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82155.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_562_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29434..29835
DNA (402bp) protein (134aa)
Endoribonuclease L-PSP n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV58_9SPHN
Endoribonuclease L-PSP {ECO:0000313|EMBL:ENY82154.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
endoribonuclease L-PSP
SCNpilot_expt_500_bf_scaffold_562_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29832..30746
DNA (915bp) protein (305aa)
butyryl-CoA dehydrogenase (EC:1.3.99.2)
Acyl-CoA dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3R2_9SPHN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENY82152.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_562_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30689..30973
DNA (285bp) protein (95aa)
Acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3R2_9SPHN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENY82152.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying items 1-30 of 182 in total

View Taxonomy