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SCNpilot_expt_500_bf_scaffold_1241_curated

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1241_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2649
DNA (2649bp) protein (883aa)
Autotransporter beta-domain-containing protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8V2_9SPHN
Autotransporter beta-domain-containing protein {ECO:0000313|EMBL:ENY80113.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
autotransporter beta-domain-containing protein
SCNpilot_expt_500_bf_scaffold_1241_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2884..3429
DNA (546bp) protein (182aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXY6_9SPHN
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY80112.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_1241_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3419..4360
DNA (942bp) protein (314aa)
Putative FecR protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9I6_9SPHN
Putative FecR protein {ECO:0000313|EMBL:ENY80111.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative FecR protein; K07165 transmembrane sensor
SCNpilot_expt_500_bf_scaffold_1241_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4363..5379
DNA (1017bp) protein (339aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80110.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1241_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6190..6645
DNA (456bp) protein (152aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80110.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1241_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6668..7429)
DNA (762bp) protein (254aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP37_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80109.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1241_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7410..7796)
DNA (387bp) protein (129aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP37_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80109.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1241_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7908..9101)
DNA (1194bp) protein (398aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8U4_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80108.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1241_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9878..10348
DNA (471bp) protein (157aa)
Ribonuclease Z {ECO:0000313|EMBL:ENY80107.1}; EC=3.1.26.11 {ECO:0000313|EMBL:ENY80107.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11]
Ribonuclease Z n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXX9_9SPHN
SCNpilot_expt_500_bf_scaffold_1241_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10822..11718)
DNA (897bp) protein (299aa)
Putative PAS/PAC sensor protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV1_9SPHN
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ENY81193.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative PAS/PAC sensor protein
SCNpilot_expt_500_bf_scaffold_1241_curated_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11813..13036)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU53_SPHAL
Putative membrane protein {ECO:0000313|EMBL:KGB57317.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1241_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13355..13714)
DNA (360bp) protein (120aa)
TadE-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USC8_9SPHN
TadE-like protein {ECO:0000313|EMBL:ENY81194.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TadE-like protein
SCNpilot_expt_500_bf_scaffold_1241_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13975..14853)
DNA (879bp) protein (293aa)
Putative glutathione S-transferase YghU n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URY1_9SPHN
Putative glutathione S-transferase YghU {ECO:0000313|EMBL:ENY81195.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative glutathione S-transferase YghU; K11209 GST-like protein
SCNpilot_expt_500_bf_scaffold_1241_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14931..15683)
DNA (753bp) protein (251aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM0_9SPHN
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ENY81196.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_500_bf_scaffold_1241_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16250..19486
DNA (3237bp) protein (1079aa)
Amidohydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W173_9SPHN
Amidohydrolase {ECO:0000313|EMBL:ENY81197.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
amidohydrolase
SCNpilot_expt_500_bf_scaffold_1241_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19757..20140
DNA (384bp) protein (128aa)
Hemimethylated DNA-binding region n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV4_9SPHN
Hemimethylated DNA-binding region {ECO:0000313|EMBL:ENY81198.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hemimethylated DNA-binding region; K11940 heat shock protein HspQ
SCNpilot_expt_500_bf_scaffold_1241_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20174..21058)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USD3_9SPHN
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09686 antibiotic transport system permease protein
SCNpilot_expt_500_bf_scaffold_1241_curated_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21581..21823
DNA (243bp) protein (81aa)
GcrA cell cycle regulator n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU61_SPHAL
GcrA cell cycle regulator; K13583 GcrA cell cycle regulator
GcrA cell cycle regulator {ECO:0000313|EMBL:ABF52811.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1241_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21820..22218
DNA (399bp) protein (133aa)
Phenylacetic acid degradation-related protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM3_9SPHN
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ENY81201.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phenylacetic acid degradation-related protein
SCNpilot_expt_500_bf_scaffold_1241_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22276..23121)
DNA (846bp) protein (282aa)
Membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W177_9SPHN
Membrane protein {ECO:0000313|EMBL:ENY81202.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
membrane protein
SCNpilot_expt_500_bf_scaffold_1241_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23304..25283
DNA (1980bp) protein (660aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV8_9SPHN
SCNpilot_expt_500_bf_scaffold_1241_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25366..25887
DNA (522bp) protein (174aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USD5_9SPHN
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY81204.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_expt_500_bf_scaffold_1241_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25884..26477
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URZ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81205.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1241_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26479..27837
DNA (1359bp) protein (453aa)
Putative beta-lactamase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM9_9SPHN
Putative beta-lactamase {ECO:0000313|EMBL:ENY81206.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative beta-lactamase
SCNpilot_expt_500_bf_scaffold_1241_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27806..28597)
DNA (792bp) protein (264aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W179_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:ENY81207.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1241_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28594..28995)
DNA (402bp) protein (134aa)
Protein ApaG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBW2_9SPHN
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_expt_500_bf_scaffold_1241_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29013..30218)
DNA (1206bp) protein (402aa)
cystathionine gamma-synthase; K01739 cystathionine gamma-synthase [EC:2.5.1.48]
Cystathionine gamma-synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USE0_9SPHN
Cystathionine gamma-synthase {ECO:0000313|EMBL:ENY81209.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1241_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30225..31271)
DNA (1047bp) protein (349aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URZ5_9SPHN
SCNpilot_expt_500_bf_scaffold_1241_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31322..32059)
DNA (738bp) protein (246aa)
DNA repair protein RecO n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCN2_9SPHN
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
recO; DNA repair protein RecO
SCNpilot_expt_500_bf_scaffold_1241_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32047..32439)
DNA (393bp) protein (131aa)
Phenylacetic acid degradation-related protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W184_9SPHN
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ENY81212.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phenylacetic acid degradation-related protein
Displaying items 1-30 of 74 in total

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