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SCNpilot_expt_500_bf_scaffold_1423_curated_8

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 8634..9116

Top 3 Functional Annotations

Value Algorithm Source
Transcription elongation factor GreB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPB0_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 160.0
  • Bit_score: 322
  • Evalue 3.10e-85
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 160.0
  • Bit_score: 322
  • Evalue 4.30e-85
transcription elongation factor GreB; K04760 transcription elongation factor GreB similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 160.0
  • Bit_score: 292
  • Evalue 1.10e-76

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 483
ATGGCGGGGGACAAGACCAATATCATCAGCCCGTCGGGCTTCGCCGCGCTGCGCGCCGAATATGATCTGCTGTTCGCAACCGAACGCCCCAAGCTCGTCGAAACGATCAGTTGGGCCGCCGGCAATGGCGACCGCAGCGAGAATGGCGACTATATCTACGGCCGCAAACGGCTACGCGAGATCGACCGGCGACTGTCCTTCCTCGCGCGCCGGATGAAGGCGGCGCGGGTCGTCGACCCCGCGGAACAGCCCGACAAAGGCCGCATCTGGTTCGGCGCCACGGTCGAACTCGCGGACGAGGAGGATGCGCGCCGCACCGTCACGCTGGTCGGCGACGATGAGGCCGATGCGGGCGCCGGCCGGATCGGCTGGAACAGTCCGCTCGCCCGGGCGCTGCGCGGCGCGGCGACCGGCGACTTGCGCACGGTCCAACTGCCCGCCGGGCCCAAGGAATGGGAAATCGTCGCCATCGCCTATCCGTGA
PROTEIN sequence
Length: 161
MAGDKTNIISPSGFAALRAEYDLLFATERPKLVETISWAAGNGDRSENGDYIYGRKRLREIDRRLSFLARRMKAARVVDPAEQPDKGRIWFGATVELADEEDARRTVTLVGDDEADAGAGRIGWNSPLARALRGAATGDLRTVQLPAGPKEWEIVAIAYP*