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SCNpilot_cont_300_bf_scaffold_283_curated_1

Organism: scnpilot_dereplicated_Stenotrophomonas_1

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 3..473

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KT84_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 156.0
  • Bit_score: 307
  • Evalue 1.00e-80
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 156.0
  • Bit_score: 307
  • Evalue 3.10e-81
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=69929 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 156.0
  • Bit_score: 307
  • Evalue 1.40e-80

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Taxonomy

Xanthomonas arboricola → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 471
ACGATCAACAAGCTCAACCGCATTTCCCGCCAGATGCTCCAGCAGTACGGCCGCGAGGCCACGCCGGAGGAGCTGGCCAAGGAAATGGACATGCCGGAAGACAAGATCCGCAAGGTGATGAAGATCGCCAAGGAGCCGATCTCGATGGAAACCCCGATCGGCGACGACGAGGATTCGCATCTGGGCGACTTCATCGAGGACACCAACGTGGAGTCCCCGATCGACAACACCACCAACATCAACCTGTCTGAAACCGTGCGCGACGTGCTGGCCGGCCTCACCCCGAGGGAAGCCAAGGTACTGCGCATGCGCTTCGGCATCGACATGAACACCGACCACACCCTGGAAGAGGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGCGTCATCCCAGCCGTTCCGAGCAGCTGCGCAGCTTCCTCGACATCGACTGA
PROTEIN sequence
Length: 157
TINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDID*